Query= MSMg01no149_p14.b1 MSMg01no149_p14.b1 CHROMAT_FILE:
MSMg01no149_p14.b1 PHD_FILE: MSMg01no149_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:25 2005
(627 letters)
>mm_chr6_8438903_8439934
Length = 1032
Score = 1112 bits (575), Expect = 0.0
Identities = 613/629 (97%), Gaps = 9/629 (1%)
Strand = Plus / Minus
Query: 6 ggaattcttcc---attacatctcctgctggggacacaggtggcaagctctgtcagggga 62
||||||||||| | | |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 638 ggaattcttccaaga--agatctcctgctggggacacgggtggcaagctctgtcagggga 581
Query: 63 tgttgggagacacaatgagctgaagtatcttgctttgcctttcagtctgcctcattgatt 122
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 580 tgttgggagacacaatgagctgaagtatcttgcttcgcctttcagtctgcctcattgatt 521
Query: 123 cactcaccaagctctagagagtctcggtcccttcatactggactagagattgtccctatg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cactcaccaagctctagagagtctcggtcccttcatactggactagagattgtccctatg 461
Query: 183 ctggaaaccggaatgagatcc-ttttttttttcccaaaaatgttcagaatattccaaatg 241
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctggaaaccggaatgagatcctttttttttttcccaaaaatgttcagaatattccaaatg 401
Query: 242 tatccgagttttggttgtaaagaggtatcttacacctttaaaagaactagaaactttaag 301
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 400 tatccgagttttggttgtaaagaggtatcttacacctttcaaagaactagaaactttaag 341
Query: 302 ac---tataagggagatgaattttgcaaaatgtttagttagcacccctacaacataagtt 358
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 actcatataagggagatgaattttgcaaaatgtttagttagcacccctacaacataagtt 281
Query: 359 cttcattgaatgagttaacaatcttaagggaacaaagcagactcttagtagtgtgaaata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cttcattgaatgagttaacaatcttaagggaacaaagcagactcttagtagtgtgaaata 221
Query: 419 gcagaagtacactggtttatatttttaatttttctttatttatttgaaggagtgggaaat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gcagaagtacactggtttatatttttaatttttctttatttatttgaaggagtgggaaat 161
Query: 479 gcactcagaacctcttacacactaggcaagtactctaccaccgtgttatatccccagact 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gcactcagaacctcttacacactaggcaagtactctaccaccgtgttatatccccagact 101
Query: 539 caataatatattgtttttcaaatggtgaacatatatatgcatatatttgtatatgttaca 598
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 100 caataatatattgtttttcaaatggtgaacatatatgtgcatatatttgtatatgttaca 41
Query: 599 tatgcataaaatattttgatgcattggtg 627
|||| ||||||||||| ||||||||||||
Sbjct: 40 tatgtataaaatatttcgatgcattggtg 12
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1032
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1022
Effective search space: 630574
Effective search space used: 630574
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_p14.g1 MSMg01no149_p14.g1 CHROMAT_FILE:
MSMg01no149_p14.g1 PHD_FILE: MSMg01no149_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:25 2005
(590 letters)
>mm_chr6_8303218_8304207
Length = 990
Score = 1094 bits (566), Expect = 0.0
Identities = 584/590 (98%)
Strand = Plus / Plus
Query: 1 agtgatcttctgtagaaccaagttgagtcagctttttagactcacttcctaagcaggcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgatcttctgtagaaccaagttgagtcagctttttagactcacttcctaagcaggcag 260
Query: 61 caaagcattctgcttcttgagattcggaactctgaaaagtgagaggttacatttgttccc 120
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 caaagcattctgcttcttgagattcataactctgaaaagtgagaggttacatttgttccc 320
Query: 121 gatgaattggagcactgggataagctagggaagagggactggctgcagggaaccctcgaa 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgaattggagcactgcgataagctagggaagagggactggctgcagggaaccctcgaa 380
Query: 181 atcaggctgtcagctgactttgtaaagcatacccttattttatgcagcagactttggaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaggctgtcagctgactttgtaaagcatacccttattttatgcagcagactttggaat 440
Query: 241 aagaatagaaatgccttaatttgcatcacagtctacagtagtgaaataactgtcccaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaatagaaatgccttaatttgcatcacagtctacagtagtgaaataactgtcccaagg 500
Query: 301 tcggagggagctgaattagaaaactgttgtgtgcacaaataagcaagattggggttaggc 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcggggggagctgaattagaaaactgttgtgtgcacaaataagcaagattggggttaggc 560
Query: 361 agtcattgtgtgtttttatcctggttgcccaacactaaaatacaaagtttcacccttgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtcattgtgtgtttttatcctggttgcccaacactaaaatacaaagtttcacccttgac 620
Query: 421 agaatagaggtgccagctgtaggtttcttggaagattttatcataggctgatgatgttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaatagaggtgccagctgtaggtttcttggaagattttatcataggctgatgatgttta 680
Query: 481 tgcagactcgctcagactccagtgtagttaggatttgggaccctcagatggcgagaggat 540
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 tgcagacacgctcagactccagtgtagttgggatttgggaccctcagatggcgagaggat 740
Query: 541 gggagatggtcaggctactgccactcttgagtctttccctgcaagaggcg 590
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggagatggtcaggctactgccactcttgagtctttccctgcaagaggcg 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
