BAC Information

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BAC

Clone NameMSMg01-150A10
Chromosome6 (Build37)
Map Location 92,772,135 - 92,772,437
singlet/doubletsinglet
Overlap geneA730049H05Rik
Upstream geneC130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866
Downstream geneLOC384461, LOC100043253, LOC665831, Magi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150A10.T7 (MSMg01no150_a10.b1)MSMg01-150A10.TJ (MSMg01no150_a10.g1)
ACCAG352580AG352581
length729748
length of high quality
(start - end)
249 (79 - 327)344 (73 - 416)
definitionCHROMAT_FILE: MSMg01no150_a10.b1 PHD_FILE: MSMg01no150_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:29 2005CHROMAT_FILE: MSMg01no150_a10.g1 PHD_FILE: MSMg01no150_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGACGATCCG
CGGAATTCACAGGATTTCACACGCACAGGGTAGATGCAAGAGGATCTCTG
GGGCATGATGGCTGTCAGCCTAGCTCCAAGTTCAGTGAAACATTGTCTGA
AAGGAAAGAGGTGGAGAGTGGTAGAAGCAGAACACTCAATATCTGTCTCT
AGCACACGTGTGCGAGCGCACGCGCACACACACACAGAAGCACACACAGG
CACACACTCACAGGCACAGACACACACAGGCACACACACAGACACACACA
CACACACAGACACACACTCACAGGCTCTCTCTCTGATACACACCCACTGG
CACACACACATATACACAGACACACATATAGGTACACACAGGCATACACT
CAAGGCACACACTCACAGTCCACGCCCCCGACACACAGTGGCACACACTG
ACACACACAGGCACAAACAGACCCACAGAAACACACAGGCACACACTCAC
AGTCACACACACATGCACACACACAGGCACACACACAAGCATACAACACA
TATACACAGACACACTCATAGGCACACACAGGCATACACACACAGGCATA
CACACACAGGCCCCTACTCCCAGGCATACAACACATATACACCGTGGCAC
ACACTGACACACACTCATTCACTCCAATACTCTGGTACACACAGGCACAA
CCACCACCATATACATATGTCCCCGGTCN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCCGGAGGCCATGAACCCTCAGCCTTG
CTTTCACTGATCCTTGGGAGTCATTGACATGACTCGCCGCAGCCTGGGAG
AATGAGAAGACAGGCTACCTCCTGCTGAATCCGATCAGCTCAGCTTCAAG
AATGGAATGCTTTAAAAAGAAGTCGAACCTCTCTACTTTCAAACAAGAGC
CTTAAATCACAGCGAAGAAGTATATAAGCAGTGGGGTTCTAGGCAACCGA
CTCTAAGGACTTTAGTTTGTCAAGCTTTTGCAAGTTAAACAGGAGACTGT
TATTGGAGTCCTGGGTTCCTCTTCCCTATCTAAAACATACATCACCCACA
TCCAAACAAAATATTACCCCCCACTCTACTGAATTCAACTCCCCCAACTC
CCTCCCACCAGCAAAGCGCTTGGCATTCATTACTACATTAAATCCCCCTA
AGAACAGCATGACATACGCCCAAGAAGGTGAAACAAACCATCCAGTGTTT
CACAGCCTATGAAAGAACAGAGAGATCTCCCTCACGCTCCCCTCTCAGTT
GCGAACAACCCCCCGGGCCGAGAGATATTGTTCAGTACTTCATATTGACA
ACTGCCATTGCTCGGACGCGAACTGCCCTGCAGGTTCAACCCACTCTACA
TATGCGCGCCAATTATTTCTCCCCCACCGTTTCTCAGCCCCCTGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_a10.g1 MSMg01no150_a10.g1 CHROMAT_FILE:
MSMg01no150_a10.g1 PHD_FILE: MSMg01no150_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:29 2005
         (344 letters)



>mm_chr6_92771935_92772678
          Length = 744

 Score =  453 bits (234), Expect = e-131
 Identities = 297/344 (86%), Gaps = 41/344 (11%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccggaggccatgaaccctcagccttgctttcactgatccttgggagtcattgacatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccggaggccatgaaccctcagccttgctttcactgatccttgggagtcattgacatga 260

                                                                       
Query: 61  ctcgccgcagcctgggagaatgagaagacaggctacctcctgctgaatccgatcagctca 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaccgcagcctgggagaatgagaagacaggctacctcctgctgaatccgatcagctca 320

                                                                       
Query: 121 gcttcaagaatggaatgctttaaaaagaagtcgaacctctctactttcaaacaagagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcaagaatggaatgctttaaaaagaagtcgaacctctctactttcaaacaagagcct 380

                                                                       
Query: 181 taaatcacagcgaagaagtatataagcagtggggttctaggcaaccgactctaaggactt 240
           ||||||||||||||| ||||||||||||||||||||||||||||| ||||          
Sbjct: 381 taaatcacagcgaaggagtatataagcagtggggttctaggcaactgact---------- 430

                                                                       
Query: 241 tagtttgtcaagcttttgcaagttaaacaggagactgttattggagtcctgggttcctct 300
            |||||||                              |||||||||||||||||| |||
Sbjct: 431 -agtttgt------------------------------tattggagtcctgggttcttct 459

                                                       
Query: 301 tccctatctaaaacatacatcacccacatccaaacaaaatatta 344
           | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 460 ttcctatctaaagcatacatcacccacatccaaacaaaatatta 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)