BAC Information

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BAC

Clone NameMSMg01-151I21
Chromosome6 (Build37)
Map Location 91,482,719 - 91,483,125
singlet/doubletsinglet
Overlap genenone
Upstream geneAldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3
Downstream geneSlc6a6, Grip2, C130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151I21.T7 (MSMg01no151_i21.b1)MSMg01-151I21.TJ (MSMg01no151_i21.g1)
ACCAG353688AG353689
length740723
length of high quality
(start - end)
243 (51 - 293)410 (79 - 488)
definitionCHROMAT_FILE: MSMg01no151_i21.b1 PHD_FILE: MSMg01no151_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:23 2005CHROMAT_FILE: MSMg01no151_i21.g1 PHD_FILE: MSMg01no151_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCCAGAAATCCGC
GGAATTCTAAGTTTATTTTATTTATTCATTTTTTTTTCTTGAGACAGGGT
TTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGATCAGGCTG
ACCTCGAACTCAGAAATCTGCCTACCTCTGCCCCAAGTGCATGGGCCACC
ACTGCCTGGTATAGGTTTTTCTTTTTAAGACAAGGTCACAGGTAGCCAGT
TATGACCTTCAAGTTCTGATTCTCCTGCCCACCAAGTGCTGGGATTAGAA
GCAGGTCCCATCACGCTTGGCTTATGCTATGTTGAAGATGGAAGCCGGGG
CCTCAGGTATGCTAGGCAAGCTACAGACCCCGTCCCACAGTTAGAAAACG
GAATGATTTTTCTCTGGCCCCCCCCAATTGAAAAGGAGATAAGTCACTGC
CCCTGATAGCAGTGAGAGACATAGCCTGTGTCAGGTCCGCCTGGCCCCAC
CACACTCCTCCATTCCCGTTACACACACATACACAGAACCCTTCTCCATT
CCTCCCAGCTCCCAGAGCTCCCCGGGCTGAAAACAAACCACCTCCGACAG
ATGTCCTTTCTTTTGACCATCTTCCCAGACCGGCCCGGTTTCCTTCCCCG
CTACCTGCCCCACCACCCATTCCCCCCTTTATCCGCCCCTTTCCCCCCTT
TCCTTCCCTCCTTTCCCACCCCCCTATCCCTTCCCCCCTT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCATTCTCGATGAGCTGATA
GGCACTGAGCACCTACCTATTGAGCACTGGGAACCCAGGGTCTGGTCCCT
AAGGAGCTTGGCACGTTAACAGGAGCTTGGCTGAGAAACACTAGGACTTA
GTTGCTTAACTGGCTAGCATCACGTAGCAAATACACAGCTGGGCTGGGAA
GCTGCTTGGCTCTCTACACTGCAGGTGAGATGCTACCCCAAAGACTAGAA
GCAGTGGAGCAGAGTGTGCTCAAGTGCCAGGTGGCTCCCTTCAGAGCTTA
CAAGCCCACCAGTGTCCCACGACCTCAGCCTTTGTCCTCTACCGTACCCT
TCTGGCAGAGAGAGGCAACGTGCGGGATCTCGGCTCTTTCTGGCTGTGTT
TCTCATTACTCCACAGCCTTCAGGCCGGTTTTCTTTACATAAACCCGAGA
CTGCTCTGCTTGAGCAACGGTCAAGTTCAACTCAAGAAGTAATCTAAGTT
GGAGATGCCCTCAAATAACCTTGGCAGGGGGGAAAAAACCCAATAACACC
AAAAAGGACACAACAAGTAACAAAACAAAAACTTCACTTCAAAAAAAAAA
AATGTCTCCCGGAAGACTCTGACCACGAACACCTGACCCCACGCCCGAGA
CCCCGATACTTCCTTAACCGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_i21.g1 MSMg01no151_i21.g1 CHROMAT_FILE:
MSMg01no151_i21.g1 PHD_FILE: MSMg01no151_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:24 2005
         (410 letters)



>mm_chr6_91482519_91483326
          Length = 808

 Score =  752 bits (389), Expect = 0.0
 Identities = 404/409 (98%), Gaps = 2/409 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcattctcgatgagctgataggcactgagcacctacctattgagcactgggaacccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttcattctcgatgagctgataggcactgagcacctacctattgagcactgggaacccag 260

                                                                       
Query: 61  ggtctggtccctaaggagcttggcacgttaacaggagcttggctgagaaacactaggact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtctggtccctaaggagcttggcacgttaacaggagcttggctgagaaacactaggact 320

                                                                       
Query: 121 tagttgcttaactggctagcatcacgtagcaaatacacagctgggctgggaagctgcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagttgcttaactggctagcatcacgtagcaaatacacagctgggctgggaagctgcttg 380

                                                                       
Query: 181 gctctctacactgcaggtgagatgctaccccaaagactagaagcagtggagcagagtgtg 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 gctctctacactgcaggtgagatgctaccctaaagactagaagcagtggagcagagtgtg 440

                                                                       
Query: 241 ctcaagtgccaggtggctcccttcagagcttacaagcccaccagtgtcccacgacctcag 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaagtgccaggtggctcccctcagagcttacaagcccaccagtgtcccacgacctcag 500

                                                                       
Query: 301 cctttgtcctctaccgtacccttctggcagagagaggcaacgtgcgggatctcggctctt 360
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 501 cctttgtcctctaccgtacccttctggcagagag-gg-aacgtgcgggatctcggctctt 558

                                                            
Query: 361 tctggctgtgtttctcattactccacagccttcaggccggttttcttta 409
           ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tctggttgtgtttctcattactccacagccttcaggccggttttcttta 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 808
Length adjustment: 9
Effective length of query: 401
Effective length of database: 799
Effective search space:   320399
Effective search space used:   320399
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)