Query= MSMg01no152_f14.b1 MSMg01no152_f14.b1 CHROMAT_FILE:
MSMg01no152_f14.b1 PHD_FILE: MSMg01no152_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:25 2005
(366 letters)
>mm_chr6_87374397_87375162
Length = 766
Score = 661 bits (342), Expect = 0.0
Identities = 357/362 (98%)
Strand = Plus / Plus
Query: 4 ggaattcaggcatactatctttttctgagatgtgaccttccttttctcctttttcttttg 63
||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 ggaattcaggcatacaatttttttctgagatgtgaccttccttttcccctttttcttttg 263
Query: 64 agaaagaacggcgaggaaagtcattcctgtctttgccatccgctagggttggagcggccc 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 agaaagaacggcgaggaaagtcattcctgtctttgccatccgctagggttggagcggcgc 323
Query: 124 cagatatgaggacaaaagagacattctcatgagacttctccctgatttcagtttctcttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagatatgaggacaaaagagacattctcatgagacttctccctgatttcagtttctcttt 383
Query: 184 tataaaatctatccatctgaattttgtgtaaagaatggcataggtaattgatatttccaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tataaaatctatccatctgaattttgtgtaaagaatggcataggtaattgatatttccaa 443
Query: 244 taagtgatcccttattgtttatcaaatgttgtttcctcattgagctatggtatcagctat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taagtgatcccttattgtttatcaaatgttgtttcctcattgagctatggtatcagctat 503
Query: 304 ttttgtttttgttttgtttttgtttttagttttggttttttgttttgttttgcttgtttt 363
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 ttttgtttttgttttgtttttgtttttagttttggttttttgttttgttttgtttgtttt 563
Query: 364 tg 365
||
Sbjct: 564 tg 565
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no152_f14.g1 MSMg01no152_f14.g1 CHROMAT_FILE:
MSMg01no152_f14.g1 PHD_FILE: MSMg01no152_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:25 2005
(470 letters)
>mm_chr6_87510386_87511255
Length = 870
Score = 741 bits (383), Expect = 0.0
Identities = 409/423 (96%), Gaps = 9/423 (2%)
Strand = Plus / Minus
Query: 53 agatttgtttttactgtgattttgacttatgtgagtctccgtgtgggcatgtgcacatga 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 agatttgtttttactgtgattttgacttatgtgagtctccgtgtgggcatgtgcacatga 811
Query: 113 atgcagatgcctgtgaagtccagagaagggcacaggattccctggagggagctggagtta 172
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 810 gtgcagatgcctgtgaagtccagagaagagcacaggattccctggagggagctggagtta 751
Query: 173 gaggcagtggtgtgctgccccatgtgggtgttgggaactgaactcaagtcctctgct--- 229
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 750 gaggcagtggtgtgctgccccatgtgggtgttgggaactgaactcaagtcctttgctaga 691
Query: 230 ------agagcagcacactgagccctacaggctctttctaggactcattcaaatgtctct 283
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 690 gcactcagagcagcacactgagccctacaggctctttctaggactcattcaaatgtctgt 631
Query: 284 ggctctagatattgggggaattacagaggagaaagagttaaaacacatcaccacactaat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ggctctagatattgggggaattacagaggagaaagagttaaaacacatcaccacactaat 571
Query: 344 gaacaaatgttgggattggcataagttaggcagagcatcaggaaacgcaggaggtctaga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaacaaatgttgggattggcataagttaggcagagcatcaggaaacgcaggaggtctaga 511
Query: 404 atgaaatccacacaggtccatgtagccaattcatttttgataaagtgccaagacaactta 463
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 510 atgaaatccacacaggtccatgtagccaattcatttttgaaaaagtgccaagacaactta 451
Query: 464 agg 466
|||
Sbjct: 450 agg 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
