BAC Information

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BAC

Clone NameMSMg01-152M10
Chromosome6 (Build37)
Map Location 15,592,431 - 15,593,048
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r3a, Foxp2, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152M10.T7 (MSMg01no152_m10.b1)MSMg01-152M10.TJ (MSMg01no152_m10.g1)
ACCAG354561AG354562
length816707
length of high quality
(start - end)
62 (173 - 234)616 (74 - 689)
definitionCHROMAT_FILE: MSMg01no152_m10.b1 PHD_FILE: MSMg01no152_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:58 2005CHROMAT_FILE: MSMg01no152_m10.g1 PHD_FILE: MSMg01no152_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTATTCCTTCTCTCCTCCCCTTTCACCCCCCCCCCCCTCCCTCTCCAN
CCCACATCTATAATTGTGGCCGCTAATAGACTACTATACAAAAGAGGATC
CGCGGAATTCTTATTTGTCTTGCCAACATTCATTAATTTGCGATCCCAAT
CAGGTGCTATCGGCTCCTTAGATGTGAGTTCACACGACAGAGCCCATTCT
TGAGTCTGGAACACTGGTTTATGTTAAAAGATTAACTCAAATGTGAAGGA
CATTACCAGACGACAATGGCAAGTAGTACCATTCAAAATAAAAGAGACCA
ACTGCCTACCATTGCTGGCACAGGTAACTGGACCATGCGCACCCTACTTC
CTAACGAACACTATCACATAACTAATCTTATTTAACACCTGGACGCAGAT
AACTTTTGGCAAATGCACTTCCCTGTTGTTCACCGCCGGCATCTAATCCT
GTGCTGAACCTTGACTTGAAGGTTTATTGGTCTAGGCTTCCTCTAGACAG
ACCTGTTTCCACACTCTCCTTCCAGGCCCGCCCCTGACGCTTTCCCCGTG
ACCCACCCTGCGACTTACCCAGTTTCCATTTTTGTTTGTATACTATAACT
CCCGCTACTCTCGACTCGATTCCAATCACCCCAATCTTTCCTGGCCCCCC
TTAGAAAACACCCGACCTCCTTCACCTTCCAGCTCTCTTCGCCCCCTTCC
TCTCTAATTTTCCCACCTGCTTGAACTCTTACCCTCCCCTCCTCACCCTT
ATTTTTACCTCCGCCTTAGACCCTCACCGCCAACTTTATACCCTCCCTAG
CTGGAAATATTTGCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGCTCCTTCTCCAGCACCATGTCTG
CTTGCATACACCATGTCCTGCCATGATAATAATGGACTAAATTTCTGAAA
CTATAAGCCAGTCCCAATTAAATGTTGTCTTTTCTTGACAGGAATAAATT
CCCTAATTAAGACACCTGATGGGTTTAAGTTCTCACTCAAGAAACTAGGC
TTTGTGATCCAACACCTCCAGATTCTATTTTAAATCCTAATGTCTCTATA
ATGGGCTTTAAGATCTTGGCAACATTATTTATTCATTCTAAGCTTTGATT
TTACCATCTATTAAATAGCCCAGGCTAGCTGAGCGCTATCTAGACAGCTA
ATAATCTACTAATAACCTTAAACTCCTCATCTTTCTATCTCTACTCCCTA
AGTGTGGGACTTAGTGGTGTTTACCACTGCTATGTCTCATTATTATTATT
AATTTTTATAATGTACTGTGCCATTTTAAAATAAGAGATAAGATCCTTAA
TCCAGTCTCTACATGTATCAGAAATATTCCATAATTTGTACATATAAATA
TATATTTATTTATAAATATATCTATAATTTATAAATATATATGTGAATTT
ATAAATGTATATTTCCTATAAAGCAGTAGAAACAGCAGTAAAACTTACAA
GAAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_m10.g1 MSMg01no152_m10.g1 CHROMAT_FILE:
MSMg01no152_m10.g1 PHD_FILE: MSMg01no152_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:58 2005
         (616 letters)



>mm_chr6_15592231_15593246
          Length = 1016

 Score = 1021 bits (528), Expect = 0.0
 Identities = 598/622 (96%), Gaps = 10/622 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagctccttctccagcaccatgtctgcttgcatacaccatgtcctgccatgataataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctccttctccagcaccatgtctgcttgcatacaccatgtcctgccatgataataat 260

                                                                       
Query: 61  ggactaaatttctgaaactataagccagtcccaattaaatgttgtcttttcttgacagga 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ggactaaatttctgaaactataagccagccccaattaaatgttgtcttttcttgacagga 320

                                                                       
Query: 121 ataaattccctaattaagacacctgatgggtttaagttctcactcaagaaactaggcttt 180
           ||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||
Sbjct: 321 ataaattccctaattaagacacctggtgggtttaggttctcattcaagaaactaggcttt 380

                                                                       
Query: 181 gtgatccaacacctccagattctattttaaatcctaatgtctctataatgggctttaaga 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 gtgatccaacacctccagattctattttaaaacctaatgtctctataatgggctttaaga 440

                                                                       
Query: 241 tcttggcaacattatttattcattctaagctttgattttaccatctattaaatagcccag 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttggcaacattatttattcattctaagctttgattttaccatctattaaatagcccag 500

                                                                       
Query: 301 gctagctgagcgctatctagacagctaa-ta-atctactaataaccttaaactcctcatc 358
           ||||||||||| |||||||||||| ||| || | ||| ||||||||||||||||||||||
Sbjct: 501 gctagctgagcactatctagacag-taaataca-ctattaataaccttaaactcctcatc 558

                                                                       
Query: 359 tttctatctctactccctaagtgtgggacttagtggtgtttaccactgctatgtctcatt 418
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 559 tttctatctctactccctaagtgtgggacttagtggtgtttatcactgctatgtctcgtt 618

                                                                       
Query: 419 attattattaatttttataatgtactgtgccattttaaaataagagataagat-ccttaa 477
           ||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||| ||
Sbjct: 619 attattattaatttttataatgtactgtgccatttaaaaaaaagagataagattcct-aa 677

                                                                       
Query: 478 tccagtctctacatgt-atcagaaatattccataatttgtacatataaatatatatttat 536
           |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tccagtatctacat-tcatcagaaatattccataatttgtacatataaatatatatttat 736

                                                                       
Query: 537 ttataaatatatctataatttataaatatatatgtga--atttataaatgtatatttcct 594
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 737 ttataaatatatctataatttataaatatatatgtgtgtatttataaatgtatatttcct 796

                                 
Query: 595 ataaagcagtagaaacagcagt 616
           ||||||||||||||||||||||
Sbjct: 797 ataaagcagtagaaacagcagt 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)