BAC Information

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BAC

Clone NameMSMg01-153I14
Chromosome6 (Build37)
Map Location 20,287,844 - 20,288,092
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040838, Kcnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153I14.T7 (MSMg01no153_i14.b1)MSMg01-153I14.TJ (MSMg01no153_i14.g1)
ACCAG355106AG355107
length721724
length of high quality
(start - end)
249 (66 - 314)604 (65 - 668)
definitionCHROMAT_FILE: MSMg01no153_i14.b1 PHD_FILE: MSMg01no153_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:56 2005CHROMAT_FILE: MSMg01no153_i14.g1 PHD_FILE: MSMg01no153_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTAAACGACTCCTATAGTCAGCAGATCCGCGGAATTCTTGCT
GGGTCGCAAACAAAGAGCCAGCCAAAATTCCTGTCCCTAACTCTGGCTTA
GATCCCCTGTTTAACAAAAGAATATCCCACCAGTATGTTACAATGCTAAT
TTCATAGATTAATACCAAGAAACAAATATCACTCCAAAAATTAAACATAA
TGATTCCCAATGATTTTGTGGTATATTAATAGATATCAAAGTGATTTCTA
ATGACATTATGCTATACTCATAGATCCTTGCCTTTTCCAGTAGTCTTCAG
AGAGGCTTTCTCTATTTTTATATGGAAGCAGGTACTGAGACTCACAGACA
TATATTATGCAGACCATCTAAATTAAAGGTCTCCATCAAGTCCTCCTTTT
GGAGATTGGAGACCATTTTGGAAGAGTGGGAGTAACAATTCAGAGGAGTC
AGAGGATTAAGAAGAGTCAGAGGTGATGGAGGAAATCAGGAGAACATGGC
CCATTGAATCAAATAAGCAGAGCATACATTGACCCACAGAAACTGAAATA
ACAAGCACACTGCCTGTATGGGTCTGCACTAGGTCCTGTGCTTACACGTT
ATATCTTTACTTTGATGTATTTATGTGACCCCTAAGAGTGGGAGCTCTGT
ATCTCTGCATCTTTGCCTGCTCGTGGGACTATTTTACTCCTCTTGGGCTG
ATTGTCCAGCCTTGATATGAT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCCCGAATTCAAGAAGGTGGTCTCCCGAAAATCTAATAACCCCAT
TAAAAAATGGGGCTCAGAGCTAAACAAAGAATTCTCACCTGAGGAATACC
GAATGGCTGAGAAGCACCTAAAAAATGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCTTGAGATTCCACCTCACAAAAGTCAGAATG
GCTAAGATCAAAATTTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAAGTAC
TCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTG
GAGGATCCCACAATACCTCTCCTGGGCATATATCCAGAAGAGGTCCCAAC
CGGTAAGAAGGACACATGCTCCACTATGTTCATAGCATCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGGTGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGATACATTTACACAATGGAGTACTACTCAGTTATTAAAAA
GAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGAAGGGCATCA
TCCTGAGTGAGGTAACCCAATCACAAAAGAACTCACACAGTATGTACTGA
CTGATAAGTGAATATTAGCCCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_i14.b1 MSMg01no153_i14.b1 CHROMAT_FILE:
MSMg01no153_i14.b1 PHD_FILE: MSMg01no153_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:56 2005
         (249 letters)



>mm_chr6_20287644_20288292
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccagccaaaattcctgtccctaactctggcttagatcccctgtttaacaaaagaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccagccaaaattcctgtccctaactctggcttagatcccctgtttaacaaaagaatat 260

                                                                       
Query: 61  cccaccagtatgttacaatgctaatttcatagattaataccaagaaacaaatatcactcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaccagtatgttacaatgctaatttcatagattaataccaagaaacaaatatcactcc 320

                                                                       
Query: 121 aaaaattaaacataatgattcccaatgattttgtggtatattaatagatatcaaagtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaattaaacataatgattcccaatgattttgtggtatattaatagatatcaaagtgat 380

                                                                       
Query: 181 ttctaatgacattatgctatactcatagatccttgccttttccagtagtcttcagagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctaatgacattatgctatactcatagatccttgccttttccagtagtcttcagagagg 440

                    
Query: 241 ctttctcta 249
           |||||||||
Sbjct: 441 ctttctcta 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)