BAC Information

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BAC

Clone NameMSMg01-153K19
Chromosome6 (Build37)
Map Location 108,679,262 - 108,847,026
singlet/doubletdoublet
Overlap geneArl8b, Edem1, EG627371
Upstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2
Downstream geneLOC639110, LOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153K19.T7 (MSMg01no153_k19.b1)MSMg01-153K19.TJ (MSMg01no153_k19.g1)
ACCAG355202AG355203
length720717
length of high quality
(start - end)
457 (87 - 543)460 (73 - 532)
definitionCHROMAT_FILE: MSMg01no153_k19.b1 PHD_FILE: MSMg01no153_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:06 2005CHROMAT_FILE: MSMg01no153_k19.g1 PHD_FILE: MSMg01no153_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,846,570 - 108,847,026)(108,679,262 - 108,679,721)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTC
TTTGTCAGATACCACCTCCCAGGGGTAGTTGGCTGGGAGAGACTGGAAAG
TTGACTAAAAAGCTCCATGGTGGGAAAAATTAAGCTGTACAGCCATGTGA
TAATAGCAGCAATAGAAAGAGAGGCAGAGCCTCCACCCACACAGCAAGTC
AGAAATACCTCAGGTATAATTAAACTCGATTCCAGAATTTAGCACCTTTT
TGTAATAAGAATCTTTGCTTGAAGTCCTTAGCATTCTGTTGCCTTGGCAA
AAACCCTATCACTTGGCATTTCTGAGGTTTCTGTCCCATTTTCAAAGAAC
AGTCTTGGTGAAGGAGCCTTGGGAAGATGCATCTGATTCCGCTGGTCTCT
TTACTACTGAGTCGCCCTCTGTGAGGAAGTAAAGGAAAGAGACTTTTGCA
GGCCTCTGCCTGCCTGGGCTTCTCGGTGATGGGTGTTCCTTGCCTCCTCC
TCACCAGTAAACCTTAAGTAGGGCACACCATGCTAACTCCAGCAGAACAC
AGCCAAGATCTCCCTGTCAGTGGCGCTTGAGGGCAAACCCTTGGTACATC
TGCTGCTTATCTCCGGATGTCAGGGTTCATAAGTGAATGCATTGGACTTG
GAATTTCCCTTTTATGCTTGCTTGACCTCTCTGTTATAATACCCAGGTTA
TGATCATCAATTCTTCCATT
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGTGAAGTGAAGGCAGGAAGATCAGA
AACGAGTTCAAAGCCAGTCGAGACTACCAGAAACACTGTCTGGAAATTCT
TATAACCAGTAAGTAGACATTATTCTATTTAATCATCAAAACAGGCAACA
AATCCAAACTGCAGATTATGGGGCAAAGAGGTATGGTTGAAACTGTGACT
ACTATCTCTATCTGGTCACCTGAGTTACTTAGACTTCTTGGGCCACTTTA
TCTGTAAAGTGGAGACTTCGATGTTATCCGTTCCACAGCATCACATCTGA
TAAACCGAATAGCTGTGAAGCATGTAATAGCTTTGCCCTTGGGGTAGTGG
GAGGGATTGGTCCTTGGTGGTAATTGGCACCGATTGGAGGAAAAGTGCTA
GGGTTCCAGGTTAGCACCATTACCACTCCCAAGCTTTGAAGAAGAGCTGG
TCTTCTGGTCTTCTCTGCCTGTTGACTGGGAGAATCGAAAAGGGCAGTGA
AGATGATGCAGGGGATACAGGTTCTTTCTGCCTAGCCTGAAAACCTGAGG
TGACTTCTAGGACCCAAATAGTGGGAGAAGAGAGACAGCCCTTGTAAATT
GACCTGTGACTTCCACTTGAGTACTTAGCACACCTTACCCCTGACCCCAT
GGCCCATGTAAACTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_k19.b1 MSMg01no153_k19.b1 CHROMAT_FILE:
MSMg01no153_k19.b1 PHD_FILE: MSMg01no153_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:06 2005
         (457 letters)



>mm_chr6_108846370_108847226
          Length = 857

 Score =  861 bits (445), Expect = 0.0
 Identities = 454/457 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagagactggaaagttgactaaaaagctccatggtgggaaaaattaagctgtacagccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gagagactggaaagttgactaaaaagctccatggtgggaaaaattaagctgtacagccat 598

                                                                       
Query: 61  gtgataatagcagcaatagaaagagaggcagagcctccacccacacagcaagtcagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gtgataatagcagcaatagaaagagaggcagagcctccacccacacagcaagtcagaaat 538

                                                                       
Query: 121 acctcaggtataattaaactcgattccagaatttagcacctttttgtaataagaatcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 acctcaggtataattaaactcgattccagaatttagcacctttttgtaataagaatcttt 478

                                                                       
Query: 181 gcttgaagtccttagcattctgttgccttggcaaaaaccctatcacttggcatttctgag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 477 gcttgaagtccttagcattctgttgccttggcaaaaaccctatcacttggcatttcagag 418

                                                                       
Query: 241 gtttctgtcccattttcaaagaacagtcttggtgaaggagccttgggaagatgcatctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtttctgtcccattttcaaagaacagtcttggtgaaggagccttgggaagatgcatctga 358

                                                                       
Query: 301 ttccgctggtctctttactactgagtcgccctctgtgaggaagtaaaggaaagagacttt 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ttccgctggtccctttactactgagtcgccctctgtgaggaagtaaaggaaagagacttt 298

                                                                       
Query: 361 tgcaggcctctgcctgcctgggcttctcggtgatgggtgttccttgcctcctcctcacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgcaggcctctgcctgcctgggcttctcggtgatgggtgttccttgcctcctcctcacca 238

                                                
Query: 421 gtaaaccttaagtagggcacaccatgctaactccagc 457
           |||||||||||||||||||| ||||||||||||||||
Sbjct: 237 gtaaaccttaagtagggcacgccatgctaactccagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no153_k19.g1 MSMg01no153_k19.g1 CHROMAT_FILE:
MSMg01no153_k19.g1 PHD_FILE: MSMg01no153_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:06 2005
         (460 letters)



>mm_chr6_108679062_108679921
          Length = 860

 Score =  835 bits (432), Expect = 0.0
 Identities = 453/460 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtgaagtgaaggcaggaagatcagaaacgagttcaaagccagtcgagactaccagaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 actgtgaagtgaaggcaggaagatcagaaacgagttcaaagccagttgagactaccagaa 260

                                                                       
Query: 61  acactgtctggaaattcttataaccagtaagtagacattattctatttaatcatcaaaac 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 acactgtctggaaattcttataaccagtaaatagacattattctatttaatcatcaaaac 320

                                                                       
Query: 121 aggcaacaaatccaaactgcagattatggggcaaagaggtatggttgaaactgtgactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcaacaaatccaaactgcagattatggggcaaagaggtatggttgaaactgtgactac 380

                                                                       
Query: 181 tatctctatctggtcacctgagttacttagacttcttgggccactttatctgtaaagtgg 240
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tatctctatctggtcacccgagttacttagacttcttgggtcactttatctgtaaagtgg 440

                                                                       
Query: 241 agacttcgatgttatccgttccacagcatcacatctgataaaccgaatagctgtgaagca 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 agacttcgatgttatccgttccacagcatcacatctgataaaccaaatagctgtgaagca 500

                                                                       
Query: 301 tgtaatagctttgcccttggggtagtgggagggattggtccttggtggtaattggcaccg 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgatagctttgcccttggggtagtgggagggattggtccttggtggtaattggcaccg 560

                                                                       
Query: 361 attggaggaaaagtgctagggttccaggttagcaccattaccactcccaagctttgaaga 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 attggaggaaaagtgctagggttccaggttagcgccattaccactcccaagctttgaaga 620

                                                   
Query: 421 agagctggtcttctggtcttctctgcctgttgactgggag 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagctggtcttctggtcttctctgcctgttgactgggag 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)