Query= MSMg01no154_p10.b1 MSMg01no154_p10.b1 CHROMAT_FILE:
MSMg01no154_p10.b1 PHD_FILE: MSMg01no154_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:45 2005
(550 letters)
>mm_chr6_86375181_86376130
Length = 950
Score = 839 bits (434), Expect = 0.0
Identities = 444/448 (99%), Gaps = 2/448 (0%)
Strand = Plus / Minus
Query: 105 gttgagttggaaagagggacttataaaaatgtaccagtaagtagcttgtaaatacagcac 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 gttgagttggaaagagggacttataaaaatgtaccagtaagtagcttgtaaatacagcac 891
Query: 165 ttggaaggcagaggcaggtggagctctgtgagttt--aaggcagaggcaagtggagctct 222
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 890 ttggaaggcagaggcaggtggagctctgtgagtttaaaaggcagaggcaagtggagctct 831
Query: 223 gtgagttcaaggcagaggcaagtgtagctctgtgagttcaaggccagcctgggcagcagt 282
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 830 gtgagttcaaggcagaggcaagtggagctctgtgagttcaaggccagcctgggcagcagt 771
Query: 283 gagatgctgtctataaaaaagtgaatagtaaaaatgagtacatggctatctgctaaagac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gagatgctgtctataaaaaagtgaatagtaaaaatgagtacatggctatctgctaaagac 711
Query: 343 atttctctctctctcaagattttagtattaccaggtgtagacacctgagctggggtctca 402
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 710 atttctctctctctcaagattttagtattaccaggtatagacacctgagctggggtctca 651
Query: 403 agtgatcaagacaaattcttaagaaaaccactatattaaatgttcaaaattatttctgaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 agtgatcaagacaaattcttaagaaaaccactatattaaatgttcaaaattatttctgaa 591
Query: 463 gaaaaaaagctttaaaagagactacccttaccgaacaaatgagtatcctttatctgggaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gaaaaaaagctttaaaagagactacccttaccgaacaaatgagtatcctttatctgggaa 531
Query: 523 gactcgaatttccattatttgtccaaat 550
||||||||||||||||||||||||||||
Sbjct: 530 gactcgaatttccattatttgtccaaat 503
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_p10.g1 MSMg01no154_p10.g1 CHROMAT_FILE:
MSMg01no154_p10.g1 PHD_FILE: MSMg01no154_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:45 2005
(496 letters)
>mm_chr6_86212177_86213072
Length = 896
Score = 866 bits (448), Expect = 0.0
Identities = 484/500 (96%), Gaps = 8/500 (1%)
Strand = Plus / Plus
Query: 1 gcaggcttctcattctcaccctatgctccagggacagagagacaaacctctgggtgtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 gcaggcttctcattctcaccctatgctccagggacagagagacaaacctttgggtgtcat 260
Query: 61 gtggagtttcttcatggtgtggaccccagcttttgggctgcatgatgacacaggagaagg 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gtggagtttcttcatggtgtggaccccagcttttgggctgtatgatgacacaggagaagg 320
Query: 121 ggcactggcaggcatctttgggatgtcattgaggaggtttctgcctttgcttacaatgac 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcactggcaggaatctttgggatgtcattgaggaggtttctgcctttgcttacaatgac 380
Query: 181 tccttcaaagactcttttt----acagaatgttgagtccatcctacatgtgtgtcagtat 236
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttcaaagactct----gaacacagaatgttgagtccatcctacatgtgtgtcagtat 436
Query: 237 gtttatccattgagcatatttgtttattctgttacaaggcatagagctctgccttcagca 296
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtttatccattgagcatctttgtttattctgttacaaggcatagagctctgccttcagca 496
Query: 297 gtatagtggtcccccaggaactagaatactggagttgcaatccttactgtgatgtctctt 356
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 497 gtatagtggttccccaggaactagaatgctggagttgcaatccttactgtgatgtctctt 556
Query: 357 tatgtgggtgctggagtccaagctcaggtcctcatctttgcacagcaagcactttgccta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tatgtgggtgctggagtccaagctcaggtcctcatctttgcacagcaagcactttgccta 616
Query: 417 ctgagccgttccttggcctctttttggggttggagataatgagatccaactgacctcaaa 476
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 617 ctgagccgttccttggcttcttttgggggttggagataatgagatccaactgacctcaaa 676
Query: 477 ctccacatatggactaggtt 496
||||||||||||||||||||
Sbjct: 677 ctccacatatggactaggtt 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
