Query= MSMg01no155_g04.b1 MSMg01no155_g04.b1 CHROMAT_FILE:
MSMg01no155_g04.b1 PHD_FILE: MSMg01no155_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:17 2005
(571 letters)
>mm_chr6_78427272_78428241
Length = 970
Score = 1044 bits (540), Expect = 0.0
Identities = 561/568 (98%), Gaps = 1/568 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaaatctggattcactgagtaattttgtcatagattgaaataagtagtattaaa 63
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaatctggagtgactgagtaattttgtcatagattgaaataagtagtattaaa 263
Query: 64 cgccaatgtgatcctcagctcactacctaccaccagcttcctctgagaggaagaaaagaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgccaatgtgatcctcagctcactacctaccaccagcttcctctgagaggaagaaaagaa 323
Query: 124 aagaagatgtaagtgtattagattttgctataagtcctctattactatgtgagatgaaag 183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 aagaagatgtaagtgtattagattttgctataagccctctattactatgtgagatgaaag 383
Query: 184 gaaaagtgtcttaaacatgtttaatttgccattggacatatgtgactttaagacaatcta 243
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaaag-gtcttaaacatgtttaatttgccattggacatatgtgactttaagacaatcta 442
Query: 244 agcatagaaaatcagcatcctgttatacatgggatagataaacacgctagggaaattttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agcatagaaaatcagcatcctgttatacatgggatagataaacacgctagggaaattttg 502
Query: 304 tgaccaagagaccagagtggttatttgctaagccacattaacttaatggacattacgaag 363
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgaccaagagtccagagtggttatttgctaagccacattaacttaatggacattacgaag 562
Query: 364 gagagtactcagtagagtcattggatattctttacttactcaaaatacaatagctccaat 423
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gagagtacacagtagagtcattggatattctttacttactcaaaatacaatagctccaat 622
Query: 424 ttctcttgcatacactagcaagattttgctgaaaggactgtctcttgtgagactatgctg 483
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 623 ttctcttgcatacactagcaagattttgctgaaaggactgtcacttgtgagactatgctg 682
Query: 484 gggcctagcaaacacagaagtgaatgttcacagtcagctattggatggatcatagggccc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gggcctagcaaacacagaagtgaatgttcacagtcagctattggatggatcatagggccc 742
Query: 544 ccaatggaggagctagagaaagtaccca 571
||||||||||||||||||||||||||||
Sbjct: 743 ccaatggaggagctagagaaagtaccca 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space: 538560
Effective search space used: 538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_g04.g1 MSMg01no155_g04.g1 CHROMAT_FILE:
MSMg01no155_g04.g1 PHD_FILE: MSMg01no155_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:17 2005
(518 letters)
>mm_chr6_78584502_78585421
Length = 920
Score = 837 bits (433), Expect = 0.0
Identities = 498/521 (95%), Gaps = 7/521 (1%)
Strand = Plus / Minus
Query: 1 attgtccatcaaagaaaatgaaaagcattattgttc-aaaaattataagcattcagaaag 59
|||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 653 attgcccatcaaagaacatgaaaagcattattgttcaaaaaattataagcattcaaaaag 594
Query: 60 gtaacatatgctaattcaatagattacaccagataaatgctaaca-ggattcattcgaat 118
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 593 gtaacatatgctaattcaatagattacaccagataaatgctaacagggattcattcgaat 534
Query: 119 tctgtctctcaggaataattga-gtgccttatttcatggtgtactaagacttgcttaggt 177
|||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||
Sbjct: 533 tctgtctctcaggaataattgacg-gccttatttcatggtgtaccaagacttgcttaggt 475
Query: 178 ttcagtggactgtttttgacttgctgaagttgattcacggcccttagtccaacatgaacc 237
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 474 ttcagtggactgcttttgacttgctgaagttgattcacggcccttagtccaacatgagcc 415
Query: 238 ctgtcaggagacaagcaagtggcttttgtgtttgcttctgcaaagctcaaaattttatta 297
|||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 414 ctgtcaggagacaagcaaatggcttttgtgcttgcttctgcaaagctcacaattttatta 355
Query: 298 ggagtaatacctatttaggaaacatgagagatcattttacattcacaatatatgtaaaac 357
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ggagtaatacatatttaggaaacatgagagatcattttacattcacaatatatgtaaaac 295
Query: 358 tggacaatcaaaacacatgatgaggtcaatatatggtttaaaataaaaatcactttacct 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 294 tggacaatcaaaacacatgatgaggtcaatatatgatttaaaataaaaatcactttacct 235
Query: 418 tatcatagcatgtaacatgaaacactgcagctgggcagggcagtggtggcagtgtacacc 477
|||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct: 234 tatcatagcatgtaacatgaaacactgcagctgggcagggcagtggtggc---gcacgcc 178
Query: 478 tttaatcccagcacttgagagacagaggcaggtagatttct 518
|||||||||||| |||| ||||||||||||||| |||||||
Sbjct: 177 tttaatcccagcccttgggagacagaggcaggtggatttct 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 920
Length adjustment: 10
Effective length of query: 508
Effective length of database: 910
Effective search space: 462280
Effective search space used: 462280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
