Query= MSMg01no155_g08.b1 MSMg01no155_g08.b1 CHROMAT_FILE:
MSMg01no155_g08.b1 PHD_FILE: MSMg01no155_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:18 2005
(486 letters)
>mm_chr6_128833898_128834783
Length = 886
Score = 851 bits (440), Expect = 0.0
Identities = 471/482 (97%), Gaps = 4/482 (0%)
Strand = Plus / Minus
Query: 7 gaattcagacccttccccagtaatttaaaatatctgtttctctcaagttatatatagtga 66
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 884 gaattcagacccttcccaagtaatttaaaatatctgtttctctcaagttatatataatga 825
Query: 67 ctgcagacaaaatggtcaaacagtgtacatgctggaataaaaatattggatggtcaatag 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ctgcagacaaaatggtcaaacagtgtacatgctggaataaaaatattggatggtcaatag 765
Query: 127 gccgaaatcagtggaatttagaaaatacacttaactctgatgtagacaaacagaaagaca 186
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 764 gccgaaatcagtggcatttataaaatgcacttaactctgatgtagacaaacagaaagaca 705
Query: 187 gacaaacagacagacagaaggttttaaagtacagcatggtctaatcatcatcagaatcgg 246
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gacagacagacagacagaaggttttaaagtacagcatggtctaatcatcatcagaatcgg 645
Query: 247 aatcatatttctttcctcggatagttttcttttccagctttgtgaagttgtcccaaa--t 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 644 aatcatatttctttcctcggatagttttcttttccagctttgtgaagttgtcccaaattt 585
Query: 305 ttttttttggggggggagggttctgaaatggtggctccattaaatttccactgtaattga 364
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ttttttttgggggggg-ggg-tctgaaatggtggctccattaaatttccactgtaattga 527
Query: 365 taacatcagaacaaccaagtctccattctaaagtttctgtagtgaagccatctatctgta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 taacatcagaacaaccaagtctccattctaaagtttctgtagtgaagccatctatctgta 467
Query: 425 tttcttaggtcggtgaatccaacaacataatcttgtgtcttgccatctctcaagagagct 484
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tttcttagggcggtgaatccaacaacataatcttgtgtcttgccatctctcaagagagct 407
Query: 485 ag 486
||
Sbjct: 406 ag 405
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_g08.g1 MSMg01no155_g08.g1 CHROMAT_FILE:
MSMg01no155_g08.g1 PHD_FILE: MSMg01no155_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:18 2005
(554 letters)
>mm_chr6_128940467_128941420
Length = 954
Score = 714 bits (369), Expect = 0.0
Identities = 480/517 (92%), Gaps = 4/517 (0%)
Strand = Plus / Plus
Query: 29 tgtgggcatgcattaagaaaggaaattgtttgccctgggattggtcaggggacccgttta 88
|||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 229 tgtgggcatgcactaagaaagggaattgtttgccctgggattggtcaggggatccgttta 288
Query: 89 aagctgtgga-tgttttcttttctacctgtatctccacagcctctctttaatgctgtcta 147
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 289 aagctgt-gactgttttcttttctacctgtacctccacagcctctctttaatgctgtcta 347
Query: 148 tagcaaatatcagcatcattgtgtattagtagaattgccaaatttggagactctatgaa- 206
||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| ||
Sbjct: 348 tagcaaaaatcagcatcattgtgtattactagagttgccaaatttggagactctat-aat 406
Query: 207 gaatagttatcaaaattaaaatatatccccaaattaatcacaactggggatagagtgggc 266
| || | ||||||||||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct: 407 ggatcctcatcaaaattaaaataaatccccaaattaatcacaactggggatggagtaggc 466
Query: 267 ttttcaaactcacaaccccacttccttcaataagaacacaccttgtctaacaaggccata 326
|||||| | ||| |||||| ||||||||||| || ||||||||||||| ||||||||||
Sbjct: 467 ttttcacattcatgaccccatttccttcaataggagcacaccttgtctagcaaggccata 526
Query: 327 tcttctaattcttcctaaacagctccaccaactaggtaccaagcatttgaatatttgagc 386
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tctcctaattcttcctaaacagctccaccaactaggtaccaagcatttgaatatttgagt 586
Query: 387 ctatggggccattctcactcaccacagtgttacataggaatatgggtaaaagactgtatg 446
||||||||||||||||| |||||| ||||||| |||| |||||||||||| |||| ||||
Sbjct: 587 ctatggggccattctcattcaccatagtgttatatagaaatatgggtaaaggactttatg 646
Query: 447 agccatctctgctaaagggaaacattgttctgttcatggcaaagctctttgtcatgaact 506
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 647 agccatctctgctaaagggaaacattgttctgttcatggtaaagctctttgtcatgtact 706
Query: 507 aagtgttggatagatggctcagctatgcaaagctagg 543
||||| |||||||||||||||||||||||||||||||
Sbjct: 707 aagtgctggatagatggctcagctatgcaaagctagg 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
