BAC Information

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BAC

Clone NameMSMg01-155P07
Chromosome6 (Build37)
Map Location 50,254,356 - 50,254,691
singlet/doubletsinglet
Overlap geneOsbpl3
Upstream geneCcdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681
Downstream geneCycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155P07.T7 (MSMg01no155_p07.b1)MSMg01-155P07.TJ (MSMg01no155_p07.g1)
ACCAG356819AG356820
length731743
length of high quality
(start - end)
205 (162 - 366)339 (76 - 414)
definitionCHROMAT_FILE: MSMg01no155_p07.b1 PHD_FILE: MSMg01no155_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:58 2005CHROMAT_FILE: MSMg01no155_p07.g1 PHD_FILE: MSMg01no155_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCATCTGAGGAATACCGAATGGCCTGAGAAGACCTGAAAAAATGTTC
CACATCCTTAATCATCAGGGAAATGCAAATCCAAAACACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACACCAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACATTCCTCCATTGTTGGTGGGA
TTGCAAGCTTGTACAACCACTCTAGAAATCAGTCTGAAGGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCCTGCCATACCTCTCTTGGACAT
ATATCCAGAAGATGTTCCAACTGGTAATAAGGACACATGCTCCACTATGT
TCATAGCACCCTCACTTATAAGAGCCAGAAGCTGGAAAGAACCCCGATGC
CCCTCAACAGAGGAATGGATACCGAAAATGCGGTACATCTACCCCATGGA
GTACTACCTCGCTATTACCCAGAATGAATTTATGACACTCCTAGGCCAAT
GGACGGACCCTGGAGGGCATCATCCTGAGCGAGGTAACCCAATCCCAAAA
GAACTCCCATGATATGTACTCCCTGATACCCGGATATTCGCCCAGAAACC
TAGAATACCCCAGATACCACACCCCATCCGCCAAACACCTGATACCCCAG
CAACACCCAACACCCCCCCCCCGCCACTTTT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATTGGGACGACTGGATTTCCACAT
GCAAAAAAAGGAAATATTTGTAATCTGATAAGTGCAAAGCACAAAATGGA
ACTCAGTTGCAAGGAAACAGTGGGTGAATGGAGTGTATGGACGTGCACCC
CAGTCACACCAACCCTGGGGACTCAGGAGAGTAAGGCAGGAGGACATTGT
AAGTGCTGTATGGCAAGATCCCATCTCAGAGAAGATGCTACGGAAAGTGC
AGCGAGCCGGGCTTGAGGTTAGAAGCTTTGGTTGCAGGCCTTGAGGATCT
GAACTTGGCATCCAGAACCCACGTGGTAGGAGAGAAGTGACCCCTGAAAG
TTACCTTCTGACCTCCCTGTGTGAGCTGTCTCACACACACACACACACAC
CCTTACACCCACACACCACTGTTTTCAACAAAGGCCCATACAGCTAGAAG
TCACACCTCGGTGGCAGTGAGCCTGCCTCCCACAAAAGGCGCAACCACAA
GACCTTTAACACCATCCCTAAAAGCATACCCCCACCCCCTGACTGTTATG
TTCCCCCATCCCTTCCTCCTGTTTCTTCCCCCACATACCCCCGTACAACC
TTCTGCTTTCCCCCCCCTGCCCTCCCCCATTGCTTGACAGCCCCTGCACC
ATATGCCAACCCCCCGTCCCCCTTGCCCCCGCCCTTGTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_p07.g1 MSMg01no155_p07.g1 CHROMAT_FILE:
MSMg01no155_p07.g1 PHD_FILE: MSMg01no155_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:58 2005
         (339 letters)



>mm_chr6_50254196_50254934
          Length = 739

 Score =  598 bits (309), Expect = e-175
 Identities = 330/337 (97%), Gaps = 1/337 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   ttgggacgactggatttccacatgcaaaaaaaggaaatatttgtaatctgataagtgcaa 62
           ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||  |||
Sbjct: 496 ttgggacaactggatttccacatgc-aaaaaaggaaatatttgtaatctgataagaacaa 438

                                                                       
Query: 63  agcacaaaatggaactcagttgcaaggaaacagtgggtgaatggagtgtatggacgtgca 122
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agcataaaatggaactcagttgcaaggaaacagtgggtgaatggagtgtatggacgtgca 378

                                                                       
Query: 123 ccccagtcacaccaaccctggggactcaggagagtaaggcaggaggacattgtaagtgct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccccagtcacaccaaccctggggactcaggagagtaaggcaggaggacattgtaagtgct 318

                                                                       
Query: 183 gtatggcaagatcccatctcagagaagatgctacggaaagtgcagcgagccgggcttgag 242
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 317 gtatggcaagatcccatctcagagaagatgctacggaaagtgcagcaagccgggcttgag 258

                                                                       
Query: 243 gttagaagctttggttgcaggccttgaggatctgaacttggcatccagaacccacgtggt 302
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 257 gttagaagctttggttgcaggccttcaggatctgaacttggcatccagaacccacgtggt 198

                                                
Query: 303 aggagagaagtgacccctgaaagttaccttctgacct 339
           |||||||||||||||||||||||||||||||||||||
Sbjct: 197 aggagagaagtgacccctgaaagttaccttctgacct 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)