BAC Information

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BAC

Clone NameMSMg01-157E22
Chromosome6 (Build37)
Map Location 85,864,555 - 85,864,868
singlet/doubletsinglet
Overlap geneCml1
Upstream geneExoc6b, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik
Downstream geneTprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157E22.T7 (MSMg01no157_e22.b1)MSMg01-157E22.TJ (MSMg01no157_e22.g1)
ACCAG357823AG357824
length731733
length of high quality
(start - end)
321 (36 - 356)288 (66 - 353)
definitionCHROMAT_FILE: MSMg01no157_e22.b1 PHD_FILE: MSMg01no157_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:37 2005CHROMAT_FILE: MSMg01no157_e22.g1 PHD_FILE: MSMg01no157_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTA
CAAGAAAAGAAGTCATTCCGACAACCAACCAGGTGCACGGTGTCAGGATG
TCATCTTTCATATGACACAGATCTCAGAGTTGCTACTGATAGTGAAGAAT
GATTGGGGACAGATAGGGACACTTTCATATTCTGGATTATGAAGACACAC
TTGTACTTCACACTGAGGAAAGGAAACGAAACGGACACCCTCTCATTTGT
TTTGAATTAACCTCCCAGGTATCTCTGTAGGGGTGTAAGGTCGATTATCA
GTAGAAATTAATTAGATTCTGAGTTCCAATGTGCCTGTGTCCAAACACCT
GCATTATGATGATACCCNACAGACCCCAAGAAGCAAACATCATATGAGAA
GTGTCCTCATGTTGACCATCAGAAAAAAGAGGCAAAACAAAACGGAGCTC
CAGGATTATTGGCTGTCTTTGCCTATGGCCCTATCTCCTCCTTATATATT
CTGCTGGGTGAAGATGGCAGGGAATGCATGTCTGTAGGGTAATTAACCTA
CTATTTCAGACTGCAGGTTCTCTCTGGATAAACTAATTTTAAGATTCAAG
CTCTTTATTCATTGGGTTCTCTTGACAGGTAGCAAGGACTAAAATCCGGA
CTCACTATCTTGGTGGCCACCCTTCCCCGTGAGCAGTACCCTGGTCTTGT
ATAATTCCCTGAGGCGGATGGCTTCTGGCGA
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAGGAAGAAGCAGC
TCATTACCAGCCAAATAAAGTGCTAGTTAATCGGTCAAGAAAAAAGCCAA
AAGTGGTTGGCGAAAGCCAGCATGCTGTTCAGCCTCCGGGCAGTCGGCTT
CAAGGTCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGGGCGTCAGCCCTG
CGCAAAGAGACAATGCGCAAAGAGACAATGCGCAAAGAGGCAATGCGCAA
ACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACAACAGGCATTTCCG
GTCTTTTAATGTTTCCACCCCCCCCGCGTCCACGTTCCGGTAGAATACGT
GCAGATTAAAGAACTTGCCAAGAAAAAACCGTAAATACGGAAACAATGCT
AATTTTACCTTGGTGCAGTTAGACAGGCTTGCCGGCATGGCACTAACTCC
TGCCGACTGGCAAACGATTGTAAAAGCCGCTCTCCCTAGTATGGGCAAAT
ATATGGAATGGAGAGCGCTTTGGCATGAGGCTGCACAAGCACAGGCCCGA
ACAAACGCAGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTTTTGACTT
GTTAACGGGTCAGGGAGCTTATTCTGCTGATCAGACAAACTACCATTGGG
GAGCTTATGCCCAAATTTCCTCCACGGCTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_e22.b1 MSMg01no157_e22.b1 CHROMAT_FILE:
MSMg01no157_e22.b1 PHD_FILE: MSMg01no157_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:37 2005
         (321 letters)



>mm_chr6_85864351_85865071
          Length = 721

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttacaagaaaagaagtcattccgacaaccaaccaggtgcacggtgtcaggat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttacaagaaaagaagtcattccgacaaccaaccaggtgcacggtgtcaggat 264

                                                                       
Query: 65  gtcatctttcatatgacacagatctcagagttgctactgatagtgaagaatgattgggga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcatctttcatatgacacagatctcagagttgctactgatagtgaagaatgattgggga 324

                                                                       
Query: 125 cagatagggacactttcatattctggattatgaagacacacttgtacttcacactgagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagatagggacactttcatattctggattatgaagacacacttgtacttcacactgagga 384

                                                                       
Query: 185 aaggaaacgaaacggacaccctctcatttgttttgaattaacctcccaggtatctctgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggaaacgaaacggacaccctctcatttgttttgaattaacctcccaggtatctctgta 444

                                                                       
Query: 245 ggggtgtaaggtcgattatcagtagaaattaattagattctgagttccaatgtgcctgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggggtgtaaggtcgattatcagtagaaattaattagattctgagttccaatgtgcctgtg 504

                         
Query: 305 tccaaacacctgca 318
           ||||||||||||||
Sbjct: 505 tccaaacacctgca 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)