BAC Information

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BAC

Clone NameMSMg01-157G09
Chromosome6 (Build37)
Map Location 127,037,818 - 127,038,064
singlet/doubletsinglet
Overlap gene9630033F20Rik
Upstream geneNtf3, LOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23
Downstream geneCcnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b, Prmt8, Tspan11, Tspan9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157G09.T7 (MSMg01no157_g09.b1)MSMg01-157G09.TJ (MSMg01no157_g09.g1)
ACCAG357889AG357890
length731733
length of high quality
(start - end)
317 (35 - 351)247 (63 - 309)
definitionCHROMAT_FILE: MSMg01no157_g09.b1 PHD_FILE: MSMg01no157_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:44 2005CHROMAT_FILE: MSMg01no157_g09.g1 PHD_FILE: MSMg01no157_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATAGT
AGACTTCTTTCAAATCTCTGTGTTTCAGTGCTGGGAGCCTGGAACCCAGG
GCCTGGGTCATGCTGGGTGAGAATTCTTCCACTGAGCCATGCCCCTAATC
CCCCACTGGCAGACCCAGCTCCACCATGGCAGATACAGTTCACTCAGAAG
CTATATATCTACCCTGTGTTCCGGTTTGAACGTGAAATGTTCCCACATAG
GCTCGTGTGTTTGACTCCTAGGGCCCTAGCGGGCTGCGCTGCCATTGAAG
TTTATGGTGCATTGGGCAGAGGGGAACCTCCCTGGAAGCAGTGGGCCCTG
TTTAGCCCACCCCCGCCCGCTTTACAGCCTGACCCACTTCCTGTCCGCTC
TCTGCTTCCTGGATGAGAATGCAGTGTGGCCTCATGTTCCTGTTGCTATG
GTTTCCCATCATGGTGGACCATATCTTTTCTTAAGCCAGATGCCAAGATG
AAGCCTTGGTTTCCCAAGTTGCTCTGGTCCGGCATTTTGCCATAGCAGCA
AGTAACTGACACACCCACCTATCTATTACTACTGGCATTTTAAAAAAAAA
CTATCTCAGTCCCATGAGGAGGTGAGGTAACGTAGATGGAGCCATCATAG
ACATTCTGCTCTCAAAAGTGTCTGGACACTCCCATCTCCCACCACACCGT
ACCCCAGCCTCTCATCCCCACCCTTCCACTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCGCTGCTTCTAAAACGGCAGCAGCAGAGGCCAAGGC
CCTCCCTTCAAAGGCTCCACTGCACGGGCTCCACACTCAGTGCTGCTTCT
CAGTCACTCCGTTCAGGTGCTCCTGGAGGTTCATACAAACGCACTGAATC
GATGGCTGGCGCGCTTCCTCACAGTCTATGATGAAGACACTGATCCCAGT
GTTGGGAGTGATGGAGGAAAGTTCCAATTTGTCTCTCGCTCCTGGCAACG
AGCATCTGAGGTCACTCAGAAAATAACCAAAGAGGCTTCTCATGTATTTT
GCTAGTTCCCAAAACTAACACGCTGGCTGCTAAGCCCAGGGTGCCACCTT
TGGGATTCGCCAAAAAAATGAAAATGTTTTCCAACGGGGAAAACCTCTGC
CAAAGAGCTTTCCAAACCGCTGCCTGGCGCTCCAGGCAGGACGCTTTCTC
TCTGCCCTGCCTTGCCCAGGATTAGCTGACAAATGAAATCAAAGAAATCC
TTTCCGCGCATCTTTACCTACAACAAAGAGGAGAGAAAGGAAGTGAATGG
TGCCATTAAATTATAAGTCTAAATACAACTATTCTAGCCTAAGGTTTCTA
TGGAACTTCAAAGCATCACTTGATGCTGAACATATTAAGAAAAAGGGAAG
GGCTGGAGAGATGGCACAGTGTTTAAAAGCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_g09.g1 MSMg01no157_g09.g1 CHROMAT_FILE:
MSMg01no157_g09.g1 PHD_FILE: MSMg01no157_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:44 2005
         (247 letters)



>mm_chr6_127037618_127038264
          Length = 647

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccgctgcttctaaaacggcagcagcagaggccaaggccctcccttcaaaggctccactg 60
           |||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 201 tccgctgcttctaaaatggcagcagcagaggccaagtccctcccttcagaggctccactg 260

                                                                       
Query: 61  cacgggctccacactcagtgctgcttctcagtcactccgttcaggtgctcctggaggttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacgggctccacactcagtgctgcttctcagtcactccgttcaggtgctcctggaggttc 320

                                                                       
Query: 121 atacaaacgcactgaatcgatggctggcgcgcttcctcacagtctatgatgaagacactg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 atacaaacgcactgaatcgatggctggcgtgcttcctcacagtctatgatgaagacactg 380

                                                                       
Query: 181 atcccagtgttgggagtgatggaggaaagttccaatttgtctctcgctcctggcaacgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcccagtgttgggagtgatggaggaaagttccaatttgtctctcgctcctggcaacgag 440

                  
Query: 241 catctga 247
           |||||||
Sbjct: 441 catctga 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)