BAC Information

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BAC

Clone NameMSMg01-157J04
Chromosome6 (Build37)
Map Location 67,435,326 - 67,435,635
singlet/doubletsinglet
Overlap geneIl23r
Upstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890
Downstream geneTacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157J04.T7 (MSMg01no157_j04.b1)MSMg01-157J04.TJ (MSMg01no157_j04.g1)
ACCAG358019AG358020
length726725
length of high quality
(start - end)
318 (42 - 359)652 (74 - 725)
definitionCHROMAT_FILE: MSMg01no157_j04.b1 PHD_FILE: MSMg01no157_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:56 2005CHROMAT_FILE: MSMg01no157_j04.g1 PHD_FILE: MSMg01no157_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGATCAACTTGAGCCTGGACAACAACAAAATGCTTAAATGATGCTCTT
TTCATCTGGTTGTTATTTGGCTTCTGTTGGTGTGTTTATTTGCCAAATTA
ATGTCATTAATTTTTAGGCTAGCTGATCCTATTAAAAAATTTTTAAAGCA
AAGATTCAGGGTGCATTTCAAAATCACCTCTGTGTTCTCACTATGGTCCC
AGTGAGTAATCTTAAGCAATTTGCTTATCTGACCTCAACCTCCATTTCGT
GGAATAAAAGTACCTGTAAGCACTCTATTTCAAAATTTTTTGAATGTATA
TTAAAAATTTTTATTTACCTCCTCGCCAATTCTTATAAATGCATGTTTTT
GATAAAACATAGGGAAATTCAACAGATAGGTATGGTGGTTTCCACCTTTG
ATCCCAGCCCATGGGAGTTGGAGGCTAGCCTATTTTATATCAGGAATTCC
AGGCCAGCCAGGGTTACGTAGAGAGATTCTATTTCCATAAACAAACAAGT
AAACACACATAGGGAGATTCTCATACAATCTCCTGTTTCTTGTCTCATAG
TCCCTGTTATGAATTACCATTACTATCATTATTAAGAAAATTTTAGTCAA
ATCAATCTCAACACATACTAAATCAGTTTGTATTCACAATATTGTGAAGG
TGTGTAAGTTCCTGTACTGATCTGTA
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCGCGCGCTGGCACACACACACACAC
ACACACACACACACACACACACACACACACACACAGACATATGCTAAAAT
AAACAAACCAAAAAATTAGAATAAGTCCACAAAATGAAGCGAATGATCTC
TTCAACAAAAATGGAAAAACACAAGACGGGCGTGGTGGCACACGCCTTTA
ATCCCAGCACTAGGGAGGCAGAGGCAGGCGTATTTCTGAGTTAAAGGCCA
GCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAAC
CCTGTCTCAACCCCCCCCCCCCAAGGAAAAACACTCAAGAAACAGTAGAA
GATATGCCATGTTCATGGCTTGGAAGAATTAATATTGTGAGGATAGCGGC
ACTTCCAAAAGCAAGAAGCCCAGATTAAATGAAGCTACCAACAAAGTTTT
AGTGACCTTCTTCTTAGAACAGAAAATACAATCTTAAAATTGGTTTGCAA
ACACAGAAGATCCCAGATAACCAAAGAAGTCCAGAGCAAAAGAAAAATGC
TAGACATATCACATACCTGATTTGAAGTTATGCTACAGGACAATGATAAC
TAAACAGCTGTACTCACACAAAACAGTCATGATCTATGGAACTAGAGACA
CAGATTCTAACTCACGCAGCTACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_j04.b1 MSMg01no157_j04.b1 CHROMAT_FILE:
MSMg01no157_j04.b1 PHD_FILE: MSMg01no157_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:56 2005
         (318 letters)



>mm_chr6_67435122_67435837
          Length = 716

 Score =  522 bits (270), Expect = e-152
 Identities = 303/316 (95%), Gaps = 10/316 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgatcaacttgagcctggacaacaacaaaatgcttaaatgatgctcttttcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcctgatcaacttgagcctggacaacaacaaaatgcttaaatgatgctcttttcat 455

                                                                       
Query: 65  ctggttgttatttggcttctgttggtgtgtttatttgccaaattaatgtcattaattttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctggttgttatttggcttctgttggtgtgtttatttgccaaattaatgtcattaattttt 395

                                                                       
Query: 125 aggctagctgatcctatt--aaaaaatttttaaag-caaagattcagggtgcatttcaaa 181
           ||||||||||||||||||  ||||||   || ||| | ||||||||||||||||||||||
Sbjct: 394 aggctagctgatcctattaaaaaaaa---ttgaagtc-aagattcagggtgcatttcaaa 339

                                                                       
Query: 182 atcacctctgtgttctcactatggtcccagtgagtaatctt-aagcaatttgcttatctg 240
           ||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 338 atcacctctgt-tt-tcactatggtcccagtgagtaatcttaaagcaatttgcttatctg 281

                                                                       
Query: 241 acctcaacctccatttcgtggaataaaagtacctgtaagcactctatttcaaaatttttt 300
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 280 acctcaacctccatttcgtggaataaaagtacctgtaagcaccctatttcaaaaattttt 221

                           
Query: 301 gaatgtatattaaaaa 316
           ||||||||||||||||
Sbjct: 220 gaatgtatattaaaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 716
Length adjustment: 9
Effective length of query: 309
Effective length of database: 707
Effective search space:   218463
Effective search space used:   218463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)