BAC Information

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BAC

Clone NameMSMg01-157K12
Chromosome6 (Build37)
Map Location 42,593,022 - 42,751,983
singlet/doubletdoublet
Overlap geneBC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1
Upstream geneTrpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2
Downstream geneOlfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157K12.T7 (MSMg01no157_k12.b1)MSMg01-157K12.TJ (MSMg01no157_k12.g1)
ACCAG358076AG358077
length738735
length of high quality
(start - end)		330 (33 - 362)292 (64 - 355)
definitionCHROMAT_FILE: MSMg01no157_k12.b1 PHD_FILE: MSMg01no157_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:02 2005CHROMAT_FILE: MSMg01no157_k12.g1 PHD_FILE: MSMg01no157_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,751,701 - 42,751,983)(42,593,022 - 42,593,308)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTTCACA
TATGGTCAGAAAATACAACTAAAATAGTAAAAAAAAAAGTGTTAAATGGT
GAATATCATTTCTAATGTTCAGGAAACACATGTGGTAAAGTCTACATATC
CTTTTGTCCAAAAAGCTTACAGTCTACTTGGTCTAGACCAACCAGGAAGG
ATTTTGTTTGCTTCTCATTTTGGGATTTAGTTTTCAGTGCATAGTTAAAA
CTATAACCAGTTGTAAAAATATACTCCATCTTGGCAGAAAATTTAAGAAG
AAAGTGCCTATCTATTTACTCCTATTTATTTAAAATGTGGGTGGGGATTT
TCTTTTGGACTGCTACAAAAAGGAATTATTTTCATTTATTTTTTTCCCTT
AAGTTTCTCCAAAGTTCTTTTCAAAGCCCCAATCACATCATTGTTCCTCA
AGCTGTAGATGAGTGGATTGAGCATTGGAGTCACAACAGCATAGAAGAGA
GCAACCATCTTCTCCTGTCCTGCTGAGGATCTGCCCACAGGCCTCATGTA
TGTAAAGATGGCTGTTCCAAAACACATAGAAACCACTGTGAGATGGGAGG
CACAAGTCCCAAAGGCTTTGCGTCGTCCTTGGGAAGAGCGAATGCGTAGA
ATGGCAGCAACAATGTGAGCATAGGAAAACAGCACCAGAATACAAGGAAG
CATGATCACCAGAAATCCTGAGATGGCTACCATGACCT

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTAGGGAGATCCCAGCTGGTCACTCCATTCATGAGG
GCCTCAATTTCACCCTCGGGAGTTGTTGCCATGGTTCTGCCCGTTGCTAC
AAAGGAAGCAGAGACTCAGGTTGGTCAAACAGGAATGAGGAAGCAGTAAG
GAAGGCAATTAACTAAATGTTTTTGGTCCAGAAGATAGATTAGTTTCTCC
TTTTGAGGATGAAGTGAAGCGCAAACAGACAAGGATTCCACTTTTATGAC
TCAAAACTATAAGAAGAGTAAAGACAATTAAATAAGTAGGCTTATAAATA
CTTATATCATTCCTCCCCCACCCCATACATACATACATACATACAACTGC
AGCAATCCCCAGTTGCTATAAATTGATGAACTATGGACAGGAAGACTGCT
TTAGAATGCATGACAGGAAAGACCTGGTAGGAATAGGAACAGAAAGCTGA
AACATGAAATGGTGTGGGAGGATCAGTTTGGTAAGAGGTACACCAGGGCA
GCAGCAGAGTGAACGGCAGAGAGGAACAAGTCCTGGGGTAGATAAGGAGG
TGCAGCTTCCCGTAGGATCTGATGAATCAAATGCAGGGACTGACTTGGTG
TTTGTTTTATTCTTTCAGACAAAAGGGCCACAATGACCTGCTATAAACTG
CGTTAGTTGGGGTCGCATGACCTTTCAGAAAGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_k12.b1 MSMg01no157_k12.b1 CHROMAT_FILE:
MSMg01no157_k12.b1 PHD_FILE: MSMg01no157_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:02 2005
         (330 letters)



>mm_chr6_42751454_42752183
          Length = 730

 Score =  464 bits (240), Expect = e-135
 Identities = 273/284 (96%), Gaps = 2/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 48  aaaaaaaaagtgttaaatggtgaatatcatttctaatgttcaggaaacacatgtggtaaa 107
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aaaaaaaaagtgttaaatggtgaatatcatttctaatgttcaggaaacacatgtggtaaa 471

                                                                       
Query: 108 gtctacatatccttttgtccaaaaagcttacagtctacttggtctagaccaaccaggaag 167
           |||||||||||| |||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct: 470 gtctacatatccctttgtccaaaaagcttacagtctattttgtctagaacaaccaggaag 411

                                                                       
Query: 168 gattttgtttgcttctcattttgggatttagttttcagtgcatagttaaaactataacca 227
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gattttctttgcttctgattttgggatttagttttcagtgcatagttaaaactataacca 351

                                                                       
Query: 228 gttgtaaaaatatactccatcttggcagaaaatttaagaagaaagtgcctatctatttac 287
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gttgtaaaactacactccatcttggcagaaaatttaagaagaaagtgcctatctatttac 291

                                                       
Query: 288 tcctatttatttaaaatg-tgggtggggattttcttttggactg 330
           |||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct: 290 tcctatttatttaaaatgctgg-tggggtttttcttttggactg 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no157_k12.g1 MSMg01no157_k12.g1 CHROMAT_FILE:
MSMg01no157_k12.g1 PHD_FILE: MSMg01no157_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:02 2005
         (292 letters)



>mm_chr6_42592822_42593513
          Length = 692

 Score =  503 bits (260), Expect = e-147
 Identities = 281/288 (97%), Gaps = 2/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagggagatcccagctggtcactccattcatgagggcctcaatttcaccctcgggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||   || | ||||||||
Sbjct: 201 tttagggagatcccagctggtcactccattcatgagggcctcaaaagcagcatcgggagt 260

                                                                       
Query: 61  tgttgccatggttctgcccgttgctacaaaggaagcagagactcaggttggtcaaac-ag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tgttgccatggttctgcccgttgctacaaaggaagcagagactcaggttggtcaaaccag 320

                                                                       
Query: 120 gaatgaggaagcagtaaggaaggcaattaactaaatgtttttggtccagaagatagatta 179
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 -aatgaggaagcagtaaggaaggcaattaactaaatgtttttggtccagaagatagatta 379

                                                                       
Query: 180 gtttctccttttgaggatgaagtgaagcgcaaacagacaaggattccacttttatgactc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtttctccttttgaggatgaagtgaagcgcaaacagacaaggattccacttttatgactc 439

                                                           
Query: 240 aaaactataagaagagtaaagacaattaaataagtaggcttataaata 287
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaactataagaagagtaaagacaattaaataagtaggcttataaata 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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