BAC Information

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BAC

Clone NameMSMg01-158K15
Chromosome6 (Build37)
Map Location 55,976,202 - 55,976,489
singlet/doubletsinglet
Overlap geneGsbs
Upstream geneGars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129
Downstream geneLOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158K15.T7 (MSMg01no158_k15.b1)MSMg01-158K15.TJ (MSMg01no158_k15.g1)
ACCAG358816AG358817
length735701
length of high quality
(start - end)
322 (39 - 360)289 (64 - 352)
definitionCHROMAT_FILE: MSMg01no158_k15.b1 PHD_FILE: MSMg01no158_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:13 2005CHROMAT_FILE: MSMg01no158_k15.g1 PHD_FILE: MSMg01no158_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
GAAAATGGCAGTAAATGCAGAAGAGACTCTTGGCTGCACAAGGTGCTGAA
AATAAGTGCTCTTTCCCCACATAAAACACATAGTATTCCCTTTAAGGCTC
ATGGAACGTTACCCAGATGAGTTTGGAAAAATCGTAAGGACTGGGAAATA
AAGAGGGGGGAGTGCAAAAAGCCATCTTTTGGGCAAAACACAGCCATTGC
AACCTTGAACTCATAGCATGTCTGCCATGACTAGGTCTGCATAAGAATGT
GCCCCTCAACAGTCAGGTATGGATGGAAGAGGGACTCAAAGGGCATCACT
CACCCTTCTTGTTTAACTATTATGCTACTGACATATTCAGGAAGAGAGGA
AGTCACTGCCCCCCCTTGCATACCACTGGAGACTCCTTCAGGCTCCATTC
CGATGCTCACACAGATAGCACTAATTAAGGGCTACACAAATCAAGTGTTA
TAGATCTGGAAAATGGACTTTTAGATATGGGCCCTGGCATAGGATAGTGA
TATGGAACTGATAGTAATTGTCTTGTTCTCTCCTCTCTCTATCATCTTCT
TATTTTGTTCTATATACTTCTCATTCCCACTTGTTCATTTCTGATTTAAT
CTTCCCTCCTTCCTGTCATCCTGTCCTTCACCCACATTTTCCTATCACCT
TTCTTCCCTCATTCATCTACATACCCTATTCCTGT
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCTCTTGAACATCATATCTTTTGATTAAGTGTTCCGA
AATCACACCTGCATGGTTAGAGGAGCAGAAAGAGGAAGAGGGTCAAGTAG
TCACGTTTGCAGATCCTAATGCGGAAGTGTTGTGCATAGGTGCATTGTGG
GCTGGTACCGGAGAAGGCAAACAATATAGCTTTCAAACCTCCGGACGCCA
CCCCATGTCTGCTGGATGTAGATGCTCATGGGAGCTTTGGAAGCTTGTGG
GGACTTTATTCCCCGTGTGTTGATGGTGTCGGGTCTTACAGGCCTGCCAT
TGTTTTTCTCACCTACCACCATGTCCCGCCCCTTACCTGGGATGAAAGGC
GGGATGCCCCCCCCTGAAGTGTCTTTCCTCCTGGGTTTCTTTTGATCTGA
CTCAACATTCAGAGTGGCCTGTACATTCTTCCCCTTCCTTGGCTTCTTTT
TGAGGTCACAGTCCTTAATGAACTGGTCTGAAAGGTCATCTGGTTCCAAA
GAGGACATGTGTTCCAAGAGTATAAGGAATAACTCAATTGAGTCGTGAGT
TGGTCCGCTTCTTACCCTTATTTGATGCTATGCACTGTATTCCTTTGTCC
CTAACAAGTGTTTATTTTTTACTCATCCTCTGTTTCATCCCACCTCTCTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_k15.g1 MSMg01no158_k15.g1 CHROMAT_FILE:
MSMg01no158_k15.g1 PHD_FILE: MSMg01no158_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:13 2005
         (289 letters)



>mm_chr6_55976002_55976690
          Length = 689

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcttgaacatcatatcttttgattaagtgttccgaaatcacacctgcatggttagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tctcttgaacatcatatcttttgattaagtgttccgaaatcacacctgcatggttagagg 429

                                                                       
Query: 61  agcagaaagaggaagagggtcaagtagtcacgtttgcagatcctaatgcggaagtgttgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 428 agcagaaagaggaagagggtcaagtagtcacgtttgcagatcctaatgtggaagtgttgt 369

                                                                       
Query: 121 gcataggtgcattgtgggctggtaccggagaaggcaaacaatatagctttcaaacctccg 180
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 368 gcataggtgcattgtgggctggtaccggagaaggcaaacaacgtagctttcaaacctccg 309

                                                                       
Query: 181 gacgccaccccatgtctgctggatgtagatgctcatgggagctttggaagcttgtgggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gacgccaccccatgtctgctggatgtagatgctcatgggagctttggaagcttgtgggga 249

                                                           
Query: 241 ctttattccccgtgtgttgatggtgtcgggtcttacaggcctgccatt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctttattccccgtgtgttgatggtgtcgggtcttacaggcctgccatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)