BAC Information

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BAC

Clone NameMSMg01-159I03
Chromosome6 (Build37)
Map Location 132,459,994 - 132,460,649
singlet/doubletsinglet
Overlap genenone
Upstream gene5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818
Downstream genePrh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159I03.T7 (MSMg01no159_i03.b1)MSMg01-159I03.TJ (MSMg01no159_i03.g1)
ACCAG359424AG359425
length739739
length of high quality
(start - end)
673 (44 - 716)656 (74 - 729)
definitionCHROMAT_FILE: MSMg01no159_i03.b1 PHD_FILE: MSMg01no159_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:15 2005CHROMAT_FILE: MSMg01no159_i03.g1 PHD_FILE: MSMg01no159_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGGCCCCCATTAAAATGAAGGGCTTTTAGTTAGACAACTTGCCTTG
GAGAATGCTAATTCTGCTTGCAAGGCTGCCCTGAGGGGTAAGACTAGAGG
CTTAGACCTCACAGGAATGATAAAGCTCTGCAGTGAGGTAGATACATTTT
CAAATCAAGTCTCAAAATCTATTAACCTGGCCATTGGAGCGGTCTTCCAA
AAAGCTGGTGGAACTAGCCAGCCTCAGCAGAGAGTGTGTTTCAGATGTGG
ACTCTTGGGACATTATGCCCGTGAATGCCTGTCCACCAGACCAGGCAAGT
CTGCCACCCAACCAGGCAAGGGCCAAGTTACACAGGGAGCCATGCCTCCT
GGCCTCTGCCCTAAATGTAAGAGAGGTCGCCACTGGGCACAAGATTGCAG
ATCCAAGTCTGATGTAAATGGTCGCCCCCTTACTGTGGTCGAGGGAAACT
ACCAGGGAGATCCTGCATGGGGCCCACTTCCTCTGATAGCACCCTAAACA
ATCCATCACTGATTCCCTCCATTCTCCCCAACAGAAGGGAGTGCAGGGAG
CACAGGATGGGACTTGTCTTCCTCCACCACCAGGATTACTCCCGAGGAAG
GGACGTTAGTTATTGAGACAGGGTAATTCGGACCCCCACCCCAACATATG
TTTTTTTTCTTATTATTGGTCGAGCATCAGGTTCCCTAC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGACATGTATGATTGATTTTTATCC
CCTGGTGGGTGGCAGGGAACAAAACTCCTCTCTATTTCAGACTGTAGAAT
GTAATCAACCTAAATATGTATTAATAATATTGTCTTAGTCCCAATATCAA
ATATTTTCGTTAAATATAAAATGTTATATTCATGAGAGAATGTATGTTTT
TGGAGGACTATCTCCTCCAAAATTGCTTTTCCAAAATTATTGCATGTCTT
ATATGCTTCTGGCTAGAAGATCCATATTCCTCCTAATATCTTTATCTCCT
TCCTGGTTTTCATGAATTCTAAAATATACACAGATCTCATTCTGTTCCTT
GTTCTTGTTTTTGTTTCTTCTCAGCAGCTTCATATAATTAATGACTGAGA
TGCCATGTTCTTTCTGTACCCTGCATACATTAGGGTTTATTATTATTATT
TATTTCAGAAATTGAGAAAGAAGATGGGTCCCTGACAAAGTCCTTCCATA
GCCATGAAGGATTAGAACTGTAATTTCACTGCATTAATAAAATGATCAGC
ATGTAACTTCTGAATGTAGTCTGTCTTTTCATGTGTCCTTCAACCTGCAA
TTTCAGGGCTGCCGATAATCTAAGATGATCAGCATTTTTGCATAGTTTCT
TCCTACAATTTCTTCCAGTAACTGTCCATAAGCCAGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_i03.g1 MSMg01no159_i03.g1 CHROMAT_FILE:
MSMg01no159_i03.g1 PHD_FILE: MSMg01no159_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:15 2005
         (656 letters)



>mm_chr6_132459794_132460849
          Length = 1056

 Score = 1230 bits (636), Expect = 0.0
 Identities = 651/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgacatgtatgattgatttttatcccctggtgggtggcagggaacaaaactcctctct 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgacaggtatgattgatttttatcccctggtgggtggcagggaacaaaactcctctct 260

                                                                       
Query: 61  atttcagactgtagaatgtaatcaacctaaatatgtattaataatattgtcttagtccca 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcagactgtagaatgcaatcaacctaaatatgtattaataatattgtcttagtccca 320

                                                                       
Query: 121 atatcaaatattttcgttaaatataaaatgttatattcatgagagaatgtatgtttttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatcaaatattttcgttaaatataaaatgttatattcatgagagaatgtatgtttttgg 380

                                                                       
Query: 181 aggactatctcctccaaaattgcttttccaaaattattgcatgtcttatatgcttctggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggactatctcctccaaaattgcttttccaaaattattgcatgtcttatatgcttctggc 440

                                                                       
Query: 241 tagaagatccatattcctcctaatatctttatctccttcctggttttcatgaattctaaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 tagaagatccatattcctcctaatatctttatctccttcctggttttcatgaattcaaaa 500

                                                                       
Query: 301 atatacacagatctcattctgttccttgttcttgtttttgtttcttctcagcagcttcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatacacagatctcattctgttccttgttcttgtttttgtttcttctcagcagcttcat 560

                                                                       
Query: 361 ataattaatgactgagatgccatgttctttctgtaccctgcatacattagggtttattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataattaatgactgagatgccatgttctttctgtaccctgcatacattagggtttattat 620

                                                                       
Query: 421 tattatttatttcagaaattgagaaagaagatgggtccctgacaaagtccttccatagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattatttatttcagaaattgagaaagaagatgggtccctgacaaagtccttccatagcc 680

                                                                       
Query: 481 atgaaggattagaactgtaatttcactgcattaataaaatgatcagcatgtaacttctga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgaaggattagaactgtaatttcactgcattaataaaatgatcagcatgtaacttctga 740

                                                                       
Query: 541 atgtagtctgtcttttcatgtgtccttcaacctgcaatttcagggctgccgataatctaa 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 741 ttgtagtctgtcttttcatgtgtccttcaacctgcaatttcagggctgccgataatttaa 800

                                                                   
Query: 601 gatgatcagcatttttgcatagtttcttcctacaatttcttccagtaactgtccat 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gatgatcagcatttttgcatagtttcttcctacaatttcttccagtaactgtccat 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)