BAC Information

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BAC

Clone NameMSMg01-159P19
Chromosome6 (Build37)
Map Location 121,062,037 - 121,185,239
singlet/doubletdoublet
Overlap geneMinpp1-ps, Pex26, Tuba8
Upstream geneNinj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793
Downstream geneUsp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159P19.T7 (MSMg01no159_p19.b1)MSMg01-159P19.TJ (MSMg01no159_p19.g1)
ACCAG359776AG359777
length770749
length of high quality
(start - end)		279 (45 - 323)356 (72 - 427)
definitionCHROMAT_FILE: MSMg01no159_p19.b1 PHD_FILE: MSMg01no159_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:49 2005CHROMAT_FILE: MSMg01no159_p19.g1 PHD_FILE: MSMg01no159_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,062,037 - 121,062,310)(121,184,884 - 121,185,239)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCCCTTAAACTGTTTAAGTCAGGGATGTTTCTCATAACTGTGAAG
AAACTGACTAAACACAGTATATCAGCACTGTTAGGAGAGGTTTATATGTG
TCTTTTCATTCCAGCCTCACACCAATGCTATGAAGGGTGTTATTTCTATT
CATACCGTTCGTTATTCCTCCTGGGGGTGGGAGTGGGGGGCAATGAAGAA
GCTAATCTGTACAGAGGTACAGACAGAGAGGCCTGACTCTGATGACCACC
CTCATAATCCTGCGAGACAGCATTGTTTTGGAGGTGAGGAGGATCNNNGT
NNGGNGAGTTTTTTTTGGCTTCCCCAAACCAGCCCCCGGAGATATTTAAG
AGAAAAAAAAGAGCCCCCCCCTTTTAAAAAAAAAAAAAAACTGCGGGGGT
GGGGGCCTTATTCTTCCTCCCCTCTTCCAAACTTCTTCCTTTATATATTC
TTATCTCTCCGATCCCTAAACTACTCACTTTTCCCTCCTTCTATTATCTT
CTTTATTTCTTTACTCTGACACTCCCATATATTTCCTATACATTCCCTAT
CTTTTTCCATTTATCTCCTACGCTTTCTTCCCATCTCCTTTCGCTTACCA
CTCAGTATTTATTCACAATTCCATTTTCCTCTTATCTCGCCTTGATCCCT
TCCCCTCCTTTAACTCTCCTACTCACACCTATCAATCCTTCCTACCCTTC
TTCATATAGATATTTTATTT

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCCACCCAAGACTGCCACACTAGAGAAGG
AAAAGGCTGAAGTCTGGTGCCAGCCAGAGAAGAGAGGGCTTTGCAGAGCC
CAGCAACTTGCCCAATCCCCTACAGGAGAGACTGGAACTGAGACACAGAT
CAATGGTGGAACCACACTTGGTCAGGGCTGTTAAGCATGAAGCTCTCTTG
CCTTCTATTTAAAGTCTACCTTCATGTTAACACCTAAAAGATAGACTTGG
GGTTCTTGGAGGAGCTCTGAATATCTGTATCGCTCTTCTCAATGTGCCCA
CATTGAATAAATATCCTTTTTCTGGCTTCTCACTATTAATTTAGCTCCAT
TTTTAAATTTTGTTCCATTTGTGTGTGGGGGGGGGGNNNCCCGNCGCCGC
CCTTCNTTTCATTCTCTTCACCTTCTCATTTATTCTATTTTCCCATCCGT
TCACATTTTTTACACCGTTTCCTCTCACTATTTTTTTATTCTTCTTGCTC
CCTGTCTTCTCTTCCTTCTATTCTATCTCCTTTATCTATCTTTTTCGTGT
TTTTCCTTATTCGTTCTACTCTTCCCCTCGTTTTGTGTTTTTCTTACTCT
TCGGCTCTCCCTCCCGCAGCTTTCTTCATTTCATTTACTTTCCTTCTTTT
CTTTTTCTGTACGTTCATTCTCGATTTTTCGTTTGTCTTCGCTCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_p19.b1 MSMg01no159_p19.b1 CHROMAT_FILE:
MSMg01no159_p19.b1 PHD_FILE: MSMg01no159_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:49 2005
         (279 letters)



>mm_chr6_121061833_121062511
          Length = 679

 Score =  476 bits (246), Expect = e-139
 Identities = 267/274 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcccttaaactgtttaagtcagggatgtttctcataactgtgaagaaactgac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcccttaaactgtttaagtcagggatgtttctcataactgtgaagaaactgac 264

                                                                       
Query: 65  taaacacagtatatcagcactgttaggagaggtttatatgtgtcttttcattccagcctc 124
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 taaacacagtatatcagtaatgttaggagaggtttatatgtgtcttttcattccaacctc 324

                                                                       
Query: 125 acaccaatgctatgaagggtgttatttctattcataccgttcgttattcctcctgggggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaccaatgctatgaagggtgttatttctattcataccgttcgttattcctcctgggggt 384

                                                                       
Query: 185 gggagtggggggcaatgaagaagctaatctgtacagaggtacagacagagaggcctgact 244
           ||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 385 gggggtggggggcaatgaagaagctaatctgtacaggggcacagacagagaggcctgact 444

                                             
Query: 245 ctgatgaccaccctcataatcctgcgagacagca 278
           |||||||||||||||||||||||||| |||||||
Sbjct: 445 ctgatgaccaccctcataatcctgcgggacagca 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no159_p19.g1 MSMg01no159_p19.g1 CHROMAT_FILE:
MSMg01no159_p19.g1 PHD_FILE: MSMg01no159_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:49 2005
         (356 letters)



>mm_chr6_121184684_121185439
          Length = 756

 Score =  658 bits (340), Expect = 0.0
 Identities = 352/356 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccacccaagactgccacactagagaaggaaaaggctgaagtctggtgccagccagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cccacccaagactgccacactagagaaggaaaaggctgaagtctggtgccagccagagaa 497

                                                                       
Query: 61  gagagggctttgcagagcccagcaacttgcccaatcccctacaggagagactggaactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gagagggctttgcagagcccagcaacttgcccaatcccctacaggagagactggaactga 437

                                                                       
Query: 121 gacacagatcaatggtggaaccacacttggtcagggctgttaagcatgaagctctcttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gacacagatcaatggtggaaccacacttggtcagggctgttaagcatgaagctctcttgc 377

                                                                       
Query: 181 cttctatttaaagtctaccttcatgttaacacctaaaagatagacttggggttcttggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cttctatttaaagtctaccttcatgttaacacctaaaagatagacttggggttcttggag 317

                                                                       
Query: 241 gagctctgaatatctgtatcgctcttctcaatgtgcccacattgaataaatatccttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gagctctgaatatctgtatcgctcttctcaatgtgcccacattgaataaatatccttttt 257

                                                                   
Query: 301 ctggcttctcactattaatttagctccatttttaaattttgttccatttgtgtgtg 356
           |||| || |||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 256 ctggtttttcactattaatttagctccatttttaaattttgttttatttgtgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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