BAC Information

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BAC

Clone NameMSMg01-160C06
Chromosome6 (Build37)
Map Location 19,086,383 - 19,086,503
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160C06.T7 (MSMg01no160_c06.b1)MSMg01-160C06.TJ (MSMg01no160_c06.g1)
ACCAG359891AG359892
length735729
length of high quality
(start - end)
315 (36 - 350)121 (70 - 190)
definitionCHROMAT_FILE: MSMg01no160_c06.b1 PHD_FILE: MSMg01no160_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:01 2005CHROMAT_FILE: MSMg01no160_c06.g1 PHD_FILE: MSMg01no160_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGC
CCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACAT
CAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTA
GACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTA
TTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGG
AAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATA
TAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGT
TTCTTTTGAACCACCCGCCCCAAAATAAACTCAAACAAGTCAATGGCCTT
TCTCCCCCCCAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACAC
CCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACT
AAGGAGGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGA
AATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTG
GCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGA
TTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGA
AGGAGCAATTTGCAAATTTGTCTGGAAAAACAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACTGGTCTTGTGGAAAATATCATATGTTTAATCATAAACAGGC
CAAAATTAAGGTTTCTTTAAATTCCCCTAATGACCATGGCTAGACAGTTG
TATATATAAGTTCAAAAGAGAGACCTGGGCAATTTACTTAGCATCTAGTC
CATGATTTAAACCTTGAACATACACTTCACAATAAAGTTAATATAGAGAT
GATTCCAGAATTTCAAAGAAAATCCTGTTCTTACCTTACACAAGGCAAAA
GCATTTTGTAAAAAACCCAGAAGAAAAACAAAAATCCATTTCTTTTTAAC
ATTACCCCCGCCCCCACATAAGCAATGTAAAAGTTTCATGATTGACCACC
ACGAAGGGGAACTTAAAATATCTATGAGGTTTAATATCAAAGAAACTATT
GGCTGGAGAACTGTAAAGAGATGTTGTATACACCAAGAACAAATTTATAG
TGAAGTTTTAAAAGGTTTCAAAATTTGGCACTTAGATGGAAGACAAGCAG
GAACTCCTTAGGTGGAAGAAAGTGTTACAGCCAGGGAGATTTTTTCAGTC
ATATTTAAATAATCAGAGAACATTTGCCACGCACTCCGGTCGAGTCAGCT
TGTCAGGCAGTGATGCCTAAAAGCCCTCCTTGAGGCAAAGACTTTCAAGG
AACCTCCCCTCCTGAAGCCGGGAGTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_c06.g1 MSMg01no160_c06.g1 CHROMAT_FILE:
MSMg01no160_c06.g1 PHD_FILE: MSMg01no160_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:01 2005
         (121 letters)



>mm_chr6_19086183_19086703
          Length = 521

 Score =  234 bits (121), Expect = 1e-66
 Identities = 121/121 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaaatatcatatgtttaatcataaacaggccaaaattaaggtttctttaaattccccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaatatcatatgtttaatcataaacaggccaaaattaaggtttctttaaattccccta 262

                                                                       
Query: 61  atgaccatggctagacagttgtatatataagttcaaaagagagacctgggcaatttactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaccatggctagacagttgtatatataagttcaaaagagagacctgggcaatttactt 202

            
Query: 121 a 121
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space:    57969
Effective search space used:    57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)