BAC Information

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BAC

Clone NameMSMg01-161A21
Chromosome6 (Build37)
Map Location 102,980,269 - 102,980,599
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666084, Cntn3, EG666123
Downstream geneChl1, LOC666141, LOC100043345
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161A21.T7 (MSMg01no161_a21.b1)MSMg01-161A21.TJ (MSMg01no161_a21.g1)
ACCAG360560AG360561
length1,1551,216
length of high quality
(start - end)
331 (474 - 804)314 (501 - 814)
definitionCHROMAT_FILE: MSMg01no161_a21.b1 PHD_FILE: MSMg01no161_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:14 2005CHROMAT_FILE: MSMg01no161_a21.g1 PHD_FILE: MSMg01no161_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGGTCAGTCGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCATTCAAGCCAACACACACCCATATAAACAACTTTGAATCATTATA
CATTCACGATTACAGCTTGCAATAGATGCTCAGCCCTCCAGGTTTTATTT
TCAGTACATGTGCTTGTTTTGCTGAGACACTACATGAGGCAAAGATTCTG
AATAAATGACTGATGTAGGACTGACAGAACCAAGAGAGGGAAGTGGGAGA
AATGAAGCAACAACTTGGCATCCACAGGCATATTTCTAGCATCAATTATA
GAGTAGAGCAGTCTAAAGTGGAAACACCGTAAAACCAGGCCACTGTGAAT
AAGGACAAGGATTCAGAGCTCCTTGCCTCTTCCTATTCAGCTGTCAATCT
TCTGTATATATGTACCTTCCTGTATATTTCTTAGCACAGGTCTGCTATAG
CCATATTTTTTTTCCCCCCCCAATGTGGTAGACAGTTTTGAAAGCTAGAC
TGTCTTCTTTTCACATAACCACCTGCCAATCCCACACTCTGCAAATATGA
TTTAGTCAACTTCTTGACTGTAATCAATTTCTGGGATAATCAATTTATAA
AGATTTGGTTTGGCTTCTAGTTTTTGAGATTTTAGTTAATGATCCAGTGT
CTAATTGCTTTTGGCTTATGGCAAGGCAGTATATCATAGCAAAAGACTAT
GGGGGAAAGGAAGAATAAAAGAGGACTAGAAGTAGCAAAGTCTTCATTTA
GGAAATGTCCCCCAAAGATCCCAATCTCTCTCTCATTAGACCCCACCATT
TAAGGTGTCTCCCAATTGTATTACACTGGTATTTTAACAAGTGGGACACA
GAAAAAGGATTGTTTTAATCTAAACAAAATTACCTTGCCAGGGTTTACTG
CTACATTTTATTTTTTTTCCTAAAGGGTCCCCTTAAAAAGAAGGTGCTTC
CAAAAAAATTAGATTGGGTGGGGGGGCCTTGTTTGTTTGCCCCCCCCCCC
TTCTATTTTTTATTATATTGTTTGGCGTTGGGTAATAATCGCTTTTAAAA
ATGGTGTAAAGGGGGGTGGTAATAAATAAAATTTTCTTCTCTCTATCTCT
GTTCCCTTCTCTCCTTAACATAGTGGGTATAAAAATTTTTTTCCCTCTCT
TTCTT
NNNGCAAGAAGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCATGACATTTTTAGACAAATAGATGGATCTGG
AGGATATCATCCTGAGTGAGGTAACCCAGTCACAAAAGAACACACATGAT
ATGCACTCACTGATAAGTGGATATTTCTCAAAACACATGAAACTCAAGAA
GGAAGAACAAAGTGTGGATTCTTCGGTCCTGCTTAGAAAGGGGAACAAAA
TACCCATGGAAGAACTTACAGAGACAAAGTGTGAAGCAGAGACTGAAGGA
ATGACCATACTGAGACTGCCCCACCTGGGGATCCATCCCACAGACAATCC
CCAAACCCAGACACTATTGTGGATGCCAACAAGTGCTTGCTGACAGGAGT
CTGATATAACTGTCTCCTGAGAGCCTCTGCCAGTTCCTGACAATTACAGA
AGTTTTTTCCCCCCCCCACCCATTGGATGGAGCACAGGAAAAAAAATGAA
GAGGCTAGAGAAAGGACCCAAGGAGCTAAAAGGGTTTGCAGCCCCATGGG
AGGAACAATAATATGAACTAACCAGTACCCCCAGAGCTCCCTGGGACTAA
ACTACCAATCAAAGAAAACACATGGTGGGACTCATGGTTCTAGCTGCATA
TGTAGCAGAGGATGGCCTAGTAGGTAATCAATGGGAAGAGAGCCCCTTGG
TCCTGTGAAAGTTCTATGTATAGGGGAATGCCAGGGCCAGGAAGCGGGAG
TGAGTGGGTTGGTAAGCAGGGGGAATGAGGAGGGCATAGTGATTTTTCAG
AGGGGAAACTAGGAAAGGGGATAACATTTGAAATGTAAATAAAAAAATAT
CTAACTTTAAAAAAAAGTAGTGATGCCATAGATATACAGGATAAAACAAA
TGGGATAAAAATTTACTAATATTTCCTAACTGAAATCATGATAATGGTCC
CCTCATATCCGGGGGGCAAAATCAGAAATTTTTGTTAGAAATTTTTAAAA
GAAACTTTTTAAAATGGTCTCCTGGGGGGTCTTATTTCCCGATTAATTTT
AAAAACTTGTATAGGCTCTTGGGCGGCATCCCCCAGAGAAAAAATCCCCT
CCCTTTTCTTTATTTAAAAAAAAGGCCCCAGGGGAAAAAGGGGGAAAAAA
AAAAAAAAGGCTTTTATTTTCTAAAAAATTTCTTATTTCGGCCTTTTTAT
ATATTTTCTACAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_a21.b1 MSMg01no161_a21.b1 CHROMAT_FILE:
MSMg01no161_a21.b1 PHD_FILE: MSMg01no161_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:14 2005
         (331 letters)



>mm_chr6_102980069_102980799
          Length = 731

 Score =  594 bits (307), Expect = e-174
 Identities = 325/331 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggtagacagttttgaaagctagactgtcttcttttcacataaccacctgccaatccc 60
           ||||||||| |||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 531 tgtggtagagagttttaaaagcttgtctgtcttcttttcacataaccacctgccaatccc 472

                                                                       
Query: 61  acactctgcaaatatgatttagtcaacttcttgactgtaatcaatttctgggataatcaa 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 acactctacaaatatgatttagtcaacttcttgactgtaatcaatttctgggataatcaa 412

                                                                       
Query: 121 tttataaagatttggtttggcttctagtttttgagattttagttaatgatccagtgtcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tttataaagatttggtttggcttctagtttttgagattttagttaatgatccagtgtcta 352

                                                                       
Query: 181 attgcttttggcttatggcaaggcagtatatcatagcaaaagactatgggggaaaggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 attgcttttggcttatggcaaggcagtatatcatagcaaaagactatgggggaaaggaag 292

                                                                       
Query: 241 aataaaagaggactagaagtagcaaagtcttcatttaggaaatgtcccccaaagatccca 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 291 aataaaagaggactagaagtagcaaagacttcatttaggaaatgtcccccaaagatccca 232

                                          
Query: 301 atctctctctcattagaccccaccatttaag 331
           |||||||||||||||||||||||||||||||
Sbjct: 231 atctctctctcattagaccccaccatttaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)