BAC Information

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BAC

Clone NameMSMg01-162N08
Chromosome6 (Build37)
Map Location 80,160,322 - 80,160,613
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621815, LOC100043392, Lrrtm4
Downstream geneLOC100043390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162N08.T7 (MSMg01no162_n08.b1)MSMg01-162N08.TJ (MSMg01no162_n08.g1)
ACCAG361837AG361838
length726730
length of high quality
(start - end)
325 (42 - 366)292 (72 - 363)
definitionCHROMAT_FILE: MSMg01no162_n08.b1 PHD_FILE: MSMg01no162_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:18 2005CHROMAT_FILE: MSMg01no162_n08.g1 PHD_FILE: MSMg01no162_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTAGCTCTGAGCCCCAATTTTTAATGGGGTTATTTGATTTTCTG
GAGTCCACCTTCATGAGTTCTTTATATATATTGGATATTAGTCCTCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCATCTGTTGGTGGCCTTTTTGT
CTTATTGATGGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGT
CCCATTTGTCTATTCTCGATCTTACAACACAAGCCATTGCTGTTCTATTC
AGGAATTTTTCCCCTGTGCCCATATCTTTGAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCAGTGTCTACGCCTCTATGCGGAGTTCCTTGATCCACT
TAGATTTGACCTTACTACAAGGAGACAGGAATGGATCAATTCACATTCTT
CTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGTTGTC
CTTTTTTCACTGGATGGCTTTATCTCCCTTGTCAAAGATCAAGTGATCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACT
TGTTTGTCGTTATACCAGTACCATGCAGTTTTTATCACAATTGTTCTGTA
GTACAGCTTTAGGTTGGGCATGGTGATTCCCCAAGAGGTTCTTTTATCAT
TGAGAAGAGTTATTGCTATCCTAGGG
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATTCAGACTCAGAACTCTGATACAAATA
ATGAATGATTAATGAATGTGTTCTTCCCAACACTGTGTCATAAGCCTTAG
GATTTTGACAAAAAGCGGTCAATTTGCCATAATTAATGGTATTATGTCCC
AGTGCACAGCTCACTGAGCAGTTCACATATATAATGTTTGTCTTTTCATA
GAGGTGTTAGGGGAATGCTTTGGGAATCTTACATCAACATATTATGTAAC
ATTGAGTTTGGAATGGAAAAGAACTAATTGAAGTAAGATATGTTTTGAAT
AACGGAAAGCTTCGCTCACAAGTAATACGTAACTCCACATGCGATTGACA
CATTGGAAAGAGTTCCTGACTTAACTAAAGATAAATGTGTCGCTATGTGT
TCCTTCTCAGCACACCCAAAGTTCTTCCAAGTTTTTCTCAAATGAGTATT
TAGAAGCAGAGAAAGTCAGGCAGAAGACTCAGAACAGGGAACTTTACTAT
TTATGCCTCTCTGTTTGTGGGAATATTCACATACAGTATCACCACGCCTG
CCACTAGCTAATTGGCTGGTTCTGTGCAGAAGAATGTTTTGCTCGTGCTC
CCTTTGCAGCATGCATACATTTAAAATTCCCTTAGAAGGAGAAATGGAGT
CGTCAAGTTAACTGTTATACAGGAAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_n08.g1 MSMg01no162_n08.g1 CHROMAT_FILE:
MSMg01no162_n08.g1 PHD_FILE: MSMg01no162_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:18 2005
         (292 letters)



>mm_chr6_80160122_80160813
          Length = 692

 Score =  534 bits (276), Expect = e-156
 Identities = 288/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattcagactcagaactctgatacaaataatgaatgattaatgaatgtgttcttcccaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cattcagactcagaactctgatacaaataatgaatgattaatgaatgtgttcttcccaac 433

                                                                       
Query: 61  actgtgtcataagccttaggattttgacaaaaagcggtcaatttgccataattaatggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 actgtgtcataagccttaggattttgacaaaaagcggtcaatttgccataattaatggta 373

                                                                       
Query: 121 ttatgtcccagtgcacagctcactgagcagttcacatatataatgtttgtcttttcatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttatgtcccagtgcacagctcactgagcagttcacatatataatgtttgtcttttcatag 313

                                                                       
Query: 181 aggtgttaggggaatgctttgggaatcttacatcaacatattatgtaacattgagtttgg 240
           ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 312 aggtgttagaggaatgctttgggaatcttgcatcaacatattatgtaacattgagtttgg 253

                                                               
Query: 241 aatggaaaagaactaattgaagtaagatatgttttgaataacggaaagcttc 292
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 252 aatggaaaagaaccaattgaagtaagatatgttttgaataacggaaaacttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)