BAC Information

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BAC

Clone NameMSMg01-163N19
Chromosome6 (Build37)
Map Location 53,171,460 - 53,171,787
singlet/doubletsinglet
Overlap geneD430007I03
Upstream geneHoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1, Jazf1, LOC666259, LOC666516
Downstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163N19.T7 (MSMg01no163_n19.b1)MSMg01-163N19.TJ (MSMg01no163_n19.g1)
ACCAG362533AG362534
length738734
length of high quality
(start - end)
315 (49 - 363)327 (379 - 705)
definitionCHROMAT_FILE: MSMg01no163_n19.b1 PHD_FILE: MSMg01no163_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:33 2005CHROMAT_FILE: MSMg01no163_n19.g1 PHD_FILE: MSMg01no163_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACTATACTCAGATCAATGTCTTGCTCAGCCATCATTAGAGA
TGCTTCCTCCTGCAGCAGATGGCAACAAATACAGAGACCCACAGCCAGAG
ACTGTGCAGAGAGTGAGAGACCTTGGAACACTCAGCCCTAAATGGGATGT
CTCCATCAAATCCCTTCCCTCAGGGCACTAGGATCATTGTGGAAGAGGAG
GCACAAAACATATAAGAGCCAAAGGAGGACACCAGGAAACAAGTCCCTCT
AACTCAACATGATCAAAGCTGGAAGGAACTCACAGAGACTGAAGCAGCAC
ACACAGGGTCTGTTTGATTCTGCACCCGCCCCTTTGGCTTCAAGTTTGGG
GTTTTTATGGGGCTCTTGAGCATGAGAATAAGTAGGTCTCTGATTCCTGT
GCCATCTCTTGGACCCTTTCGTCTCTGTTTGCTTTGTCCAAATCTGATGT
GTTAGTCTTTGTCTTATGTTATCCCTCAAAAGCCGATTTGTTTTCTAATG
AGAGACAGAAAGGAAGTGGCTCTGGATGGGAGGGGATGCAGGGAGGAGGG
ACGGGATGTGGGGAGGAACTGGGAGGAACTTTTATCAGGATATATTATGT
TTGAACAATATCTACTTTCACGAGAAGGAAAATATAAATCCTCTCTGCTA
TACAAAGCAAAGATGGCTTCGTTTTAATACCTAGAATA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGACAAACGTTGCCAGCTGC
AGCCTCACCAATGGCTCCGCGTCGCGCCTTGGTTCATCACGAACTCTGTG
ATTCCAGAGTTACTGACACTTCACTACCCAGGTGAATACCATCTACTACC
CAGCAGCCGTGGCTGAACAGACAGGAATGGTTTGATATTTCTGCAATTTT
GTTGTTTTGAGAGTTCTCTGTGGGGTCTTTGGACAGTGTATAATCTTAGA
AAGTTGAAGTAGAAAAATGTTCCTTTGCCAATTTTCTTTTTCCAGTTTCT
GCTTCTTANTTCGCGCNNTCCGAGACACTGGGGCAGATGGAGCACCCGAT
CATTCTTAGCTTTCCTCATTAAAAAAACAAATTAGCAATGCATTATAAGC
TGCAATTGAAATACAATGGGTTTTACTAGCCTCCTGCCCCACGTACCCCT
ACCCCTTCAAACTGATGTCAAAAAAGAGGAAAAAGAGAACAAAAAAGTTG
ATGTTTATATTTGGAGTCAGAGCTAATAGAAAAAAATTATATATTTTTTG
TCTTCTCAGAATCCTTATTTGCTGTGAACCAAGTGAGAAAATAGGCCCAC
AGAGCAGGCAAGTGACAATTATTTTAAGTCACTCCACTGTGGATGATCCG
ATTAGCCTGAGTTCTATTGATGGAGGGACACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_n19.g1 MSMg01no163_n19.g1 CHROMAT_FILE:
MSMg01no163_n19.g1 PHD_FILE: MSMg01no163_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:33 2005
         (327 letters)



>mm_chr6_53171260_53171987
          Length = 728

 Score =  572 bits (296), Expect = e-168
 Identities = 320/328 (97%), Gaps = 1/328 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggcagatggagcacccgatcattcttagctttcctcattaaaaaaacaaattagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||   ||  |||||||||||
Sbjct: 201 tggggcagatggagcacccgatcattcttagctttcctcatttgcaagtcaaattagcaa 260

                                                                       
Query: 61  tgcattataagctgcaattgaaatacaatgggttttactagcctcctgccccacgtaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tgcattataagctgcaattgaaatacaatgggttttactagcctcctgccccacgtacct 320

                                                                       
Query: 121 ctaccccttcaaactgatgtcaaaaaagaggaaaaagagaacaaaaaagttgatgtttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaccccttcaaactgatgtcaaaaaagaggaaaaagagaacaaaaaagttgatgtttat 380

                                                                       
Query: 181 atttggagtcagagctaatagaaaaaaa-ttatatattttttgtcttctcagaatcctta 239
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 atttggagtcagagctaatagaaaaaaaattatatattttttgtcttctcagaatcctta 440

                                                                       
Query: 240 tttgctgtgaaccaagtgagaaaataggcccacagagcaggcaagtgacaattattttaa 299
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 tttgctgtgaaccaagtgagaaaataggcccacagagcaggcaactgacaattattttaa 500

                                       
Query: 300 gtcactccactgtggatgatccgattag 327
           ||||||||||||||||||||||||||||
Sbjct: 501 gtcactccactgtggatgatccgattag 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 728
Length adjustment: 9
Effective length of query: 318
Effective length of database: 719
Effective search space:   228642
Effective search space used:   228642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)