BAC Information

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BAC

Clone NameMSMg01-164E08
Chromosome6 (Build37)
Map Location 67,170,834 - 67,171,148
singlet/doubletsinglet
Overlap geneEG667310
Upstream geneLOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik
Downstream geneLOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164E08.T7 (MSMg01no164_e08.b1)MSMg01-164E08.TJ (MSMg01no164_e08.g1)
ACCAG362801AG362802
length743735
length of high quality
(start - end)
318 (45 - 362)545 (73 - 617)
definitionCHROMAT_FILE: MSMg01no164_e08.b1 PHD_FILE: MSMg01no164_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:04 2005CHROMAT_FILE: MSMg01no164_e08.g1 PHD_FILE: MSMg01no164_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAATAAGGATCTGCAAGCCAGGAAGTGTGGTGCATGCCTTTAATC
CCAGCACTGGGAGGTGGATCTCTGTCAGTTTGAGGCCAGCCTGATCTATA
GAGTGAATTCTAGGATAGCCAGGGCTACACAAGGAAACCCTGTGGGGAAG
GGGAGGGGCTGATCTGATTTTCCACACAAGTAACTTATCAGCTTGCTTAA
AGACAATCTAAATGAATTTTCCCCATTCCATGTTTCTTTGGTTTTTCCAT
TTTCCCTCTTTTCCCCCAAGGATAAGAACATGGCAGCAGTGGGTTCGCTC
AACTGACTACTATTATGGTTATGCTCACCGCTTTATTAATTCAAAAGCAC
TTTACAAGAAAATACCCACATGGCTTCTAATAGGAATGCTATACCTGGAC
TTGATGCCAAGTTCACAGATTTGTGTGCAAGAGAAAACAGGCTTTTAAGT
TAAACAACAATTTGCAACCAAAACTTTAACCCAAGGATTCTCACAAACAT
ATTTCAAATGACAGTATGAAAATAAATCTTGCACGGTAACTCAAAAGTTC
AACTCTACAATGTACAGCAGCTCCTCAACCAGGATGGAACCGCTTTGAAA
ACCTTCTGGGTGCCGTTCCTACCCTTTCCCTGTTGGCTTGTGTTCACAGC
AGCCTCTAAAGACTGCTTATCAATTCATCCACAGGACCACACN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTTGTGTCAGCCATTTTCTACTGGGC
ATGAGGCCTACCTTTATGTACCCACTGGAGGAGATGAATTTGTCCTTTGT
TAACAGGAGTCAATTGAGGATAGTTTCTTGGGTAGGGATTGGAAGGGTGT
CCACTTCCCCGTCCTAGCACTGGAACCCTGTCTGGCTTGAACCTGTAATG
GCCCTGTATATGGTGCCACAGTCTCTGATTTCATGTGTGGTATCAGTCCT
GCTGTGCCTGGTTTGCTTTACTGTCCTCCAGCACCTCTGGCTTTACAATC
TTTTACCTCCTCTTCCTCATAACTCCCTTTTCCTGAAGGGACGGGTTTGC
TAAAGGCATCCAGCTGTAGGTCTCTGGATTAGGTTCCACCTACTGAAAGA
GAAACGTTCTCTGATGATGGCTGTGCAAGGCACTGATCTACGGGTATACC
AAACGGCATTAGGAGTAATTTTATTGTTGTATTCCCTTAGCAAAAATACA
CTGCATTGTTTTCCCCGGGGTCCATGGCCTATCTACTTTCAGGTTCTTGG
TCAACCAAGCAGTTTTGGGCATGAGTTCCACAGGCCTTATCAGAGAGTGG
CTGGGTATTGTCATAACATTTACTCCCTTGTTGCATCAGAAAATCTTGCA
AACAGGTCACATTGGTAGGAGGGCAGAATTTGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_e08.b1 MSMg01no164_e08.b1 CHROMAT_FILE:
MSMg01no164_e08.b1 PHD_FILE: MSMg01no164_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:04 2005
         (318 letters)



>mm_chr6_67170631_67171348
          Length = 718

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacaataaggatctgcaagccaggaagtgtggtgcatgcctttaatcccagcac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacaataaggatctgcaagccaggaagtgtggtgcatgcctttaatcccagcac 263

                                                                       
Query: 64  tgggaggtggatctctgtcagtttgaggccagcctgatctatagagtgaattctaggata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgggaggtggatctctgtcagtttgaggccagcctgatctatagagtgaattctaggata 323

                                                                       
Query: 124 gccagggctacacaaggaaaccctgtggggaaggggaggggctgatctgattttccacac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 gccagggctacacaaggaaaccctgtggggaaggggaggggctgatctgattttctacac 383

                                                                       
Query: 184 aagtaacttatcagcttgcttaaagacaatctaaatgaattttccccattccatgtttct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagtaacttatcagcttgcttaaagacaatctaaatgaattttccccattccatgtttct 443

                                                                       
Query: 244 ttggtttttccattttccctcttttcccccaaggataagaacatggcagcagtgggttcg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttggtttttccattttccctcttttcccccaaggataagaacatggcagcagtgggttcg 503

                          
Query: 304 ctcaactgactacta 318
           |||||||||||||||
Sbjct: 504 ctcaactgactacta 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)