Query= MSMg01no165_p05.b1 MSMg01no165_p05.b1 CHROMAT_FILE:
MSMg01no165_p05.b1 PHD_FILE: MSMg01no165_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:18 2005
(566 letters)
>mm_chr6_113075159_113076123
Length = 965
Score = 1007 bits (521), Expect = 0.0
Identities = 552/563 (98%), Gaps = 3/563 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagtttaaatccgctgctttaatattttctgagaaaaatccagattagattata 63
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtttaaat-tgctgctttaatatttcctgagaaaaatccagattagattata 262
Query: 64 caacataaacattttgtgggcggggcaaactaacctatttttttttaaagctagaaatct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caacataaacattttgtgggcggggcaaactaacctatttttttttaaagctagaaatct 322
Query: 124 gagtcaactttttcttgggtatgagcattttacctgcatatgtgtaagtgttaccacatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagtcaactttttcttgggtatgagcattttacctgcatatgtgtaagtgttaccacatg 382
Query: 184 catgcctgggcattcagaggccagagttgagttggagtttgagatggcctctatatgggt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 catgcctgggcattcagaggccagagttgagttggagtttgagatggcctctatatgggt 442
Query: 244 gtcagtaaccaaacttaggtcctctgcaagagcaacatgcactcttaaaccactgagcca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtcagtaaccaaacttaggtcctctgcaagagcaacatgcactcttaaaccactgagcca 502
Query: 304 tctccaaagaatagtatatattcttactaatagacctactgtttcatatatcattgaaaa 363
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tctccaaagaataatatatattcttactaatagacctactgtttcatatatcattgaaaa 562
Query: 364 acctcctaacccaaaagcagtataggacaagtttgtgtctatatgtttatacccagattg 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acctcctaagttaaaagcagtataggacaagtttgtgtctatatgtttatacccagattg 622
Query: 424 ttcacttgtgaagacatttattaatcttccaggagtgtttaaatttaattaatttgagat 483
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 623 ttcacttgtgaagacatttattaatcttccaggagtgtctaaatttaattaatttgagat 682
Query: 484 agatagacacaaataaattcatgtctcctgttttttttttttgtctttgttgtgtttgtt 543
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 683 agatagacacaaataaattcatgtctcctggttttttttt--gtctttgttgtgtttgtt 740
Query: 544 taaggattttttttttatatgag 566
|||||||||||||||||||||||
Sbjct: 741 taaggattttttttttatatgag 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 965
Length adjustment: 10
Effective length of query: 556
Effective length of database: 955
Effective search space: 530980
Effective search space used: 530980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_p05.g1 MSMg01no165_p05.g1 CHROMAT_FILE:
MSMg01no165_p05.g1 PHD_FILE: MSMg01no165_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:18 2005
(449 letters)
>mm_chr6_113246910_113247758
Length = 849
Score = 685 bits (354), Expect = 0.0
Identities = 363/366 (99%)
Strand = Plus / Minus
Query: 84 atgccctgcttttatttaaaactttcatttttctgtctttaacattttctaagccaggta 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 atgccctgcttttatttaaaactttcatttttctgtctttaacattttctaagccaggta 790
Query: 144 gtggtggcgcacacctttaatcctagcacttgggaggcagaggcaggcggatttctgagt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gtggtggcgcacacctttaatcctagcacttgggaggcagaggcaggcggatttctgagt 730
Query: 204 tctaggccagcctgatttacagagtgagtttcaggacagccaggactacacagagaaacc 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tctaggccagcctgatttacagagtgagtttcaggacagccaggactacacagagaaacc 670
Query: 264 ctgtcttgaaaaaaacaaaaacaaaactatagcaatgttatgttagcttttatgattaaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctgtcttgaaaaaaacaaaaacaaaactatagcaatgttatgttagcttttatgattaaa 610
Query: 324 gtagctgttatcctcatcacccatcagagagtaaatcaatctgcaatagggaatagaaag 383
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtagctgttatcctcattatgcatcagagagtaaatcaatctgcaatagggaatagaaag 550
Query: 384 tctatggacccaaaatctctcacgaagcctttaacatgtgtttagtatttgggttttttg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tctatggacccaaaatctctcacgaagcctttaacatgtgtttagtatttgggttttttg 490
Query: 444 ttgttt 449
||||||
Sbjct: 489 ttgttt 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
