BAC Information

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BAC

Clone NameMSMg01-167C04
Chromosome6 (Build37)
Map Location 136,292,332 - 136,292,609
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043890, Emp1, Grin2b, EG668137
Downstream geneLOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h, Rerg, Ptpro
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167C04.T7 (MSMg01no167_c04.b1)MSMg01-167C04.TJ (MSMg01no167_c04.g1)
ACCAG364737AG364738
length719751
length of high quality
(start - end)
663 (36 - 698)278 (76 - 353)
definitionCHROMAT_FILE: MSMg01no167_c04.b1 PHD_FILE: MSMg01no167_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:49 2005CHROMAT_FILE: MSMg01no167_c04.g1 PHD_FILE: MSMg01no167_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAC
TCCTCCAGCACCATGTCTGCCTGGATGCTGCCATGCTTCCCACCATGACA
ATAATGGACTAAACCTCCGAAACTGTAAGCCAGCCTCAATTAAATGTTTG
CCTTTATACGAGCTGCCTTGGTCATGATATCTCTTCACAGCAATGGAAAC
CCTAACTAAAACAAGCAGCAATAGAGGACATGGACTGTGGACCTCTATCC
TCCCAACCAGCACGCACACATACACCACATACACACATAATAATAATAAT
AATAATAATAATAATAATAATAATAATGTTTGACATTTTGACTTGAATAA
ATATTTCTCCATAAAAATACAACTTGTTAATAAGTACTTGTAAAGATATT
AAACATCACTAATCATTAGTAAAGTGTACACAATGAGGGCTGGAGAGATG
GCTCAGAAGTTAAGAGCACTTGCTGCTCTTGCAGAAGACTGGAGCTTTTT
TCCCAGCATGCACAGGGAGCAGCTCACAACCAGGGGATCTGACATTCTAT
CTGACCTCTATGGATACCCATAAACATGGAAACACACACAAGCACACAAG
CACACAAATAAAGTAAATTAAACAAGAAGAAAATAAGGTATTATGTCATA
CTCCTAAGACAGTTAGTAGTAAAAAGGAAAGAGATGGGTGTTGCTGAAGA
TGAGGAGGAATCCATTGTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTCTAACTGCACATGCTCCGTGG
TTGTTACTGGTCAGATCAGGAGGACAGACACTGGGCATCTGTCATGTGTT
GGTCCTCAAGGTGGGCACCAGGCATAGAGAACTGATCACTCATAACTACT
AATCAAGAAATATTAGCTGGGGCTGGTGGTGCTTGCTTGTAATCCCAACA
CTAGAGAGTCTGGGGCAGGAGGGTCACCATAAATTTGAGGTCAGCCTAGG
CTACATAGTCAAGAAATTAAATTAAAGGGGTGTGGGTTGGGAGTGGGGAG
ATGNNTTCTCCCCCCCCCCCCCGNAGCTTTTTTTAATGAATTATCTTTAC
CCCCAATTTCCCCCCCCCATTTAAATATTTCCCTCTTTTTTCTCTCCTTT
CTATGCTTTTTGCAATTTCTTATACATCTTCTCGCCTCCAACTGCTTTTT
TATTTTTGCCCTTTCTCTAGGCGGCTAATTCTATTCCCTTTAGACCACAT
TCCCTTACCCTGCGCATTTTTTAATTACTTTTCCCCCCTTTTAAACTGAT
TTTTTTTTTCTCCTCACCTTTTTCTCGCCCCCCCTGTTTATGTTTTTGTA
TTCCCCCAGCCCCCCTTTTTTGTTTTAATCTCCCGTCCCTTTTTCCCCCC
ACCCCTTCCCCACCTCTTTTTCTTGTTCCTTTTTTCACCCCCTCCATCTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_c04.g1 MSMg01no167_c04.g1 CHROMAT_FILE:
MSMg01no167_c04.g1 PHD_FILE: MSMg01no167_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:50 2005
         (278 letters)



>mm_chr6_136292271_136292948
          Length = 678

 Score =  538 bits (278), Expect = e-157
 Identities = 278/278 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttctaactgcacatgctccgtggttgttactggtcagatcaggaggacagacactggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 acttctaactgcacatgctccgtggttgttactggtcagatcaggaggacagacactggg 280

                                                                       
Query: 61  catctgtcatgtgttggtcctcaaggtgggcaccaggcatagagaactgatcactcataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 catctgtcatgtgttggtcctcaaggtgggcaccaggcatagagaactgatcactcataa 220

                                                                       
Query: 121 ctactaatcaagaaatattagctggggctggtggtgcttgcttgtaatcccaacactaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ctactaatcaagaaatattagctggggctggtggtgcttgcttgtaatcccaacactaga 160

                                                                       
Query: 181 gagtctggggcaggagggtcaccataaatttgaggtcagcctaggctacatagtcaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gagtctggggcaggagggtcaccataaatttgaggtcagcctaggctacatagtcaagaa 100

                                                 
Query: 241 attaaattaaaggggtgtgggttgggagtggggagatg 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 99  attaaattaaaggggtgtgggttgggagtggggagatg 62


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)