BAC Information

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BAC

Clone NameMSMg01-168B07
Chromosome6 (Build37)
Map Location 20,444,436 - 20,444,745
singlet/doubletsinglet
Overlap geneLOC100040838
Upstream genenone
Downstream geneKcnd2, LOC100041343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168B07.T7 (MSMg01no168_b07.b1)MSMg01-168B07.TJ (MSMg01no168_b07.g1)
ACCAG365376AG365377
length725718
length of high quality
(start - end)
314 (42 - 355)96 (70 - 165)
definitionCHROMAT_FILE: MSMg01no168_b07.b1 PHD_FILE: MSMg01no168_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:04 2005CHROMAT_FILE: MSMg01no168_b07.g1 PHD_FILE: MSMg01no168_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGGGGAAAATTTTTAATATTTTTCATTGTTAGAATATAAATGATGATT
ATTCTCATAGAAGAATTGTTATGTATTTAACAGTAACAAGAGGGATTATT
AAATGAACCAGATTGTGAAAACATCTCAAAAGCCCCCTTAGGGAGTCTAA
TTTTCTTTTGCTTAATTTTAAATCATAATACTTTACTAAATTATGAGGTA
TAAGACTGTGAACCTTAGCAAATCAGCCTATTTGTGTCTATTATATACAC
TGGCAGCAGAGGATTTATTTATAGCAGTCATTATTGTGGCTAAAATTATA
ATATGTTAATGAGTTGCACGAACAATCCCTTTGCTAGCATCTGAGGAGTG
GAGAATGAAGGCACCAATAGAATACTAAATTGTATGATGAAGGAGTCTCT
TATGTGAGGGTTTTAGTGCTATGATTTCTACTTTTGCTTATAATGACTCA
CCTGTATTTAAAACTGCCTATATGATCGTGACCTGCCCTTTATATCCCGC
TTGACACTTACATGACAAACAACATCTTTACGTCCAGGCACCTAAATGTT
GGAACACTCCATATCACCTTCCTCTCAGCCAATTCTGATAAGCCCACGCG
CACCTTTTATAATTTTAATCACTGCCATAGTCGATTTTATTTCACTCGAA
TGTATTACCTATCCCTCTACAGTAN
AAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGTTTATATATGTACTTGATTTTAAACTG
GGTTATTTGATTTATTGATGTCTAGTTTCTTGTATTATTTATATATTTTG
AATACCAGCCTTCTTGTCAGATATGGGTTTGGTGAAAGAATTTTTTCCTT
TGTAGAGACACCTGTTTGTCCTTTTGAAAGTTTCCTTTGCTGCTTAACAT
TTTAACTCCTGAGGTCCTATTTATAATTGGCTACCACAAAGGCTGAAGCT
CCTTGCTTTTTTTTTTTTTCCCCCACTTTTTCCTCCCCTCGGCCCCCGCA
AATTTTTTGTGTTTTTCCCCCCCCCCCCCCCCCCCCGGGTATTTGTTTAT
TATTTTTTATTTTTTTTTTGTTTGCCCCCGGATACCTATAAAAATAATAT
GCCTTGGCGGGGGGGGGGCGGCCAATTTTCCCCAACAGTAGTTTCCCGCC
GTCCCCTTTTATTTTCCCTTTCTTTTTTTCTCTTCTCCATCTCCTCCCCC
CTTTTAAAAAATAATAACATATGATCTCTTCAAAACTATATAATATTTTA
CTCTTCTTACCCGCGCCCCCCCCTCCTTATATCGTTCTTTTTCCCTCCCC
CTCCCTTCTAAAATTAATCTTACGCACAGCATAAACTAATCCCCCCTTTC
TATTACTCTTACCCCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_b07.b1 MSMg01no168_b07.b1 CHROMAT_FILE:
MSMg01no168_b07.b1 PHD_FILE: MSMg01no168_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:04 2005
         (314 letters)



>mm_chr6_20444233_20444945
          Length = 713

 Score =  557 bits (288), Expect = e-163
 Identities = 305/316 (96%), Gaps = 11/316 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaggggaaaatttttaatatttttcattgttagaatataaatgatgattattc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggaattccaggggaaaatttttaatatttttcattgttagaatataaatgatgattattc 454

                                                                       
Query: 64  tcatagaagaattgttatgtatttaacagtaacaagagggattattaaatgaaccagatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tcatagaagaattgttatgtatttaacagtaacaagagggattattaaatgaaccagatt 394

                                                                       
Query: 124 gtgaaaacatctcaaaagcccccttagggagtctaattttcttttgcttaattttaaatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtgaaaacatctcaaaagcccccttagggagtctaattttcttttgcttaattttaaatc 334

                                                                       
Query: 184 ataatactttactaaattatgaggtataagactgtgaaccttagcaaatcagcctatttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ataatactttactaaattatgaggtataagactgtgaaccttagcaaatcagcctatttg 274

                                                                       
Query: 244 tgtctattatatacactggcagcagagg-----atttatttatagcagtcattattgtgg 298
           ||||||||||||||||||||||||||||     |   |   |||||||||||||||||||
Sbjct: 273 tgtctattatatacactggcagcagaggaggaaa---a---atagcagtcattattgtgg 220

                           
Query: 299 ctaaaattataatatg 314
           ||||||||||||||||
Sbjct: 219 ctaaaattataatatg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space:   214720
Effective search space used:   214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)