BAC Information

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BAC

Clone NameMSMg01-168C19
Chromosome6 (Build37)
Map Location 113,229,255 - 113,229,478
singlet/doubletsinglet
Overlap geneMtmr14
Upstream geneLmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4
Downstream geneCpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168C19.T7 (MSMg01no168_c19.b1)MSMg01-168C19.TJ (MSMg01no168_c19.g1)
ACCAG365443AG365444
length1,0081,154
length of high quality
(start - end)
447 (28 - 474)224 (499 - 722)
definitionCHROMAT_FILE: MSMg01no168_c19.b1 PHD_FILE: MSMg01no168_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:13 2005CHROMAT_FILE: MSMg01no168_c19.g1 PHD_FILE: MSMg01no168_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTGCTATGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCTT
TGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAG
TCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCCAA
TTTGGGATAGGTAAAGATCCTTTCCCCATCTGTTGGTGGCCTTTTTGTCT
TATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCC
CATTTATCGATTCTTGATCTTACAGCAAAAGCCATTGCTGTTCTATTCAG
GAATTTTTCCCCTGTACCCATATCTTTGAGGCTTTTCCCTACTTTCTCCT
CTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTTTTTTTTTTA
GATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCTTTTTTTTTT
CCCCCCCCCCCCTCNAGTTGTGNCAGCACCAAAAAAAAAGGAGGCTGTCT
TTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATA
GGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGGTCTACTT
GTCTGTCACTATACCAGTACCATGCAGTTTTGATCACAATTGGACATAGT
ACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATG
TCCCAACCGATAAGAAGAACACATGCTCCACTATGTTCATAGCAGCCTTG
GTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCTCCAGAGGA
ATGGATACCGAAAATGTGGGTCTTTTTATCCATGGGATTTTTATTTTTCT
TTTTTTCAAAAGTAATTTTTTTATATCCCTTTCCCTATTTGCTTGTTCTT
TTTGCGTTCTTTTCTCCCCCCCTTGCTACCCCTCTCCTCCCCTTTTTCTT
TTTTTTCCCCTCTCCTCGTACTCCTCCTCTTTTCTTTTTATCTTTATCCT
CTATAACT
NNNAAATCAAGGNTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACACAGGGTTGTCTGATGCCCTAGAGGGTC
TGTAACAGAAAAGGCTTGAGGTTATCATCTGGCACTCATCCTCTGGACTC
AAGGTCAGGTATGCAGACATTCTGCTAGATGGTTGGCTGGAGAACACTTT
TCAAGGGCCACAGACCCAGAAAAGTCTCCACAGCCATCCACAAAGACTAA
CGAGGATGCTAACTCATCCCAATTTCGTCCCCAAAAGCCAACCTTGGAGA
ATACAACCTTGTCTCCAGATTCTGTAAAAGCAACTGCAATGTGCCCCCTT
CCTAATAAGCCCAGGTCCTGGGGAAACAGATTGAAGTCTGGTATTTTTTT
ACAGTCTTGAGGCCAAGAGGAAAAGAGAAAAGTTCCGAGGGAATTTTTTT
TTCCCCCCCCCCTGAGAGGNAGAGGAAGCAAAAAAAAAAAGGGGAAGNAA
AGTCAGACTGATCCTATAGCAGCACAAGGAAAATGAGGCAATGACTATCC
CTGCAACCCTGAGCTCTCTGCTGGCACTGTGGGAGACATGTGCAATGTCT
CTGTATCCATACAGCACAAGGGATAGCCAAGGGTCTAGCTGTGTATTCAC
ATGGCCTTCCACCTTCAGGAAGCAGACAGGACAAAGACCAATCTGCTTAG
TGACAAGAAATGGAACCAAGACAGGGTACTGATGTCCACAGTACAAAAAG
TAGGCAGTGAAGCTGGGATAGCAGGTTTGGGAAAGTCAAGGTTAAGAGTT
CCAGACCTAGCCTGTGAACAAAGAAACTAGGATTTATATTGCTTCCTCCT
AAGTCCAAGGGGTCCTTCACAAGGGTCAAAGAGATCACTTATTCCCTCCG
CCCTTTTGAAAAAATCCCCAAAATTGGTTAATTTGGTTGGGGAAATCTAA
AAAAACCCTCCTAATTTTTTTTTTTTGAAAAATTTTTTTGAATATTATGT
ATTTCTCTTCCCTTTCTTTTTCAAATTTAGTAAATTTTTATTTTTATTTA
TTAAATTGTGTCTTTTCTTGCTTTTCTAAAAAAAACAATATTTTCTTTCT
CTCTTGCTTTGATATTCTTCTTTAATATATAATATTTATTATTTTCTCTC
CTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_c19.g1 MSMg01no168_c19.g1 CHROMAT_FILE:
MSMg01no168_c19.g1 PHD_FILE: MSMg01no168_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:13 2005
         (224 letters)



>mm_chr6_113229055_113229678
          Length = 624

 Score =  433 bits (224), Expect = e-126
 Identities = 224/224 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtcagactgatcctatagcagcacaaggaaaatgaggcaatgactatccctgcaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aaagtcagactgatcctatagcagcacaaggaaaatgaggcaatgactatccctgcaacc 365

                                                                       
Query: 61  ctgagctctctgctggcactgtgggagacatgtgcaatgtctctgtatccatacagcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctgagctctctgctggcactgtgggagacatgtgcaatgtctctgtatccatacagcaca 305

                                                                       
Query: 121 agggatagccaagggtctagctgtgtattcacatggccttccaccttcaggaagcagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agggatagccaagggtctagctgtgtattcacatggccttccaccttcaggaagcagaca 245

                                                       
Query: 181 ggacaaagaccaatctgcttagtgacaagaaatggaaccaagac 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggacaaagaccaatctgcttagtgacaagaaatggaaccaagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)