BAC Information

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BAC

Clone NameMSMg01-169F04
Chromosome6 (Build37)
Map Location 25,799,145 - 25,799,455
singlet/doubletsinglet
Overlap genenone
Upstream geneHyal5, 6332401O19Rik, LOC384358, Gpr37, Pot1a
Downstream geneEG626912, LOC100041210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169F04.T7 (MSMg01no169_f04.b1)MSMg01-169F04.TJ (MSMg01no169_f04.g1)
ACCAG366228AG366229
length737764
length of high quality
(start - end)
315 (46 - 360)---
definitionCHROMAT_FILE: MSMg01no169_f04.b1 PHD_FILE: MSMg01no169_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:59 2005CHROMAT_FILE: MSMg01no169_f04.g1 PHD_FILE: MSMg01no169_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATAAAATCTTTTTCCATGTGTCCAAAAGAAATCACAGACACTAC
AGCAAGCGATCGCTATATCTTCATTATAATGTTTCTGTGAAAAGAGGACA
TTATGGATGAAGATGGGAAGAAAGTTGAGGCAGGGTATTACATGTCTGTC
TGTTAAGTTGCTACTGGTTTTTGAAATACAGTTCCTGGACTCTTCCATAC
TGAATTTTATCACAACCAATAATTTACCATTCATCCCTCAGACTTTTGAT
CAGCATAAATTATCATAAATGACATATAGTCATGAACTAATAGTTGTACA
TGAGGTAAATATTTTTTAGTGCCTCCCCCCCCCCTTGAAGCTAATTAAGG
TATTCGCATGAGTGTTAACATTTTTGCAAACATTGTTCAGGGCACGCATT
GCAAATCTGCAAATATGTAAACAAGAACACCTTTACCTGTGGTGAGGCTA
ATGCATTTTTCATGCATTCTTGAGAGATATAAGCTTCCAATGACAGCACA
GGCACTCTGATTTTAATGGTTGCATACAGAATATGCTAGTAATTATTTAA
GTTTTTACTTTAATTAATGGAAGATAAAAAGACCTTTCTTCAATGAGTAA
AGTTGACAATCCTACTGAAGTTAACAGTCATACAACACCAAAAAAGGATT
TAACAAAATCTCAGTTATCACTTTTTTAAATTATCTT
AAACAAGCACACCGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCGATACAGA
GAAACCCGGCCGGGAAAACCAACCAACCAAACAAACAAACCAAACAAACA
AACAAACCAAAAACGGGGGGGATGAAATGGGGGTTTCCAAAGGGAAAACC
AGAAAGGGGATAACATCTGAAATATAAATACCGAAAATATCTAATAAAAA
AAGTCAAGATTGAGCTTGACCTGACCTATGCCCCTGAAACCATTAAAGAA
GTTCTGGATCATAAAACACCCCACCCACTGATACGACCCAGTTCCTTTGC
TAACATATGGAGGCTTTTTTATTTTCCCCCCCCCCCCCCCCATTGCCATT
TGTACCTTCCTTGAGAAAATTCCCGGGCGAAAAAGAAAAGAAACCTCGCG
AACCCCAAAAAAAGATACAAACCAACCCCTGTACCCCTGCCAACATCTTA
AAATATAAGGGTAAAACTTGCAAATTAAACAAATCCCCTCTGGCTCCCCA
ACGGCCCACCCCCACCCAGAACTTCCCAACCGCCCCGGGGCAAACCTTCT
CATTACACCACCCCCAACCACTTTCCCAAAACGGTCCCCTACCCGAACCC
CCCTCCCGCCCCCCCCCGGAAGTCAACTTTTGTCTCAACAACCCTCCAAG
CAACCCCAACCCCCCCCCACCCCCCCATAAACACGCCTAACCCCCCCCCC
TCCCACCCCCGGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_f04.b1 MSMg01no169_f04.b1 CHROMAT_FILE:
MSMg01no169_f04.b1 PHD_FILE: MSMg01no169_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:59 2005
         (315 letters)



>mm_chr6_25798941_25799655
          Length = 715

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccataaaatctttttccatgtgtccaaaagaaatcacagacactacagcaagcga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattccataaaatctttttccatgtgtccaaaagaaatcacagacactacagcaagcga 456

                                                                       
Query: 65  tcgctatatcttcattataatgtttctgtgaaaagaggacattatggatgaagatgggaa 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 455 tcgctatatcttcattataatgtttctgtgaaaacaggacattatggatgaagatgggaa 396

                                                                       
Query: 125 gaaagttgaggcagggtattacatgtctgtctgttaagttgctactggtttttgaaatac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gaaagttgaggcagggtattacatgtctgtctgttaagttgctactggtttttgaaatac 336

                                                                       
Query: 185 agttcctggactcttccatactgaattttatcacaaccaataatttaccattcatccctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agttcctggactcttccatactgaattttatcacaaccaataatttaccattcatccctc 276

                                                                       
Query: 245 agacttttgatcagcataaattatcataaatgacatatagtcatgaactaatagttgtac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agacttttgatcagcataaattatcataaatgacatatagtcatgaactaatagttgtac 216

                      
Query: 305 atgaggtaaat 315
           |||||||||||
Sbjct: 215 atgaggtaaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)