BAC Information

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BAC

Clone NameMSMg01-171B11
Chromosome6 (Build37)
Map Location 110,403,421 - 110,403,734
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171B11.T7 (MSMg01no171_b11.b1)MSMg01-171B11.TJ (MSMg01no171_b11.g1)
ACCAG367447AG367448
length739859
length of high quality
(start - end)
319 (23 - 341)97 (77 - 173)
definitionCHROMAT_FILE: MSMg01no171_b11.b1 PHD_FILE: MSMg01no171_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:14 2005CHROMAT_FILE: MSMg01no171_b11.g1 PHD_FILE: MSMg01no171_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCACTCACAAAGATCTT
ATTAGTCTTCTGTATGTTCATCCAACACAGGGAAAAAATGAAACAACACT
TTATTTTTAATATTGAAATCAGTATATTTTTTTCTCCAAAACAAGACTCT
ATATTATATTTTACCTTTGGCACACTTGAATGTTGACAATTTTGTGTGGC
TGCTTTAAAGTATTAAAATCCTTCAAGATAAACAAGAAGTAAACCATTGA
CTCTTAAGGATTAATTTAAAGTACGGATATATGTCTGTGGGGGGCCTGTT
CTCCTGAGTGCAATGCCTTGGGTTGATAGCTTGGAGCTGCAGTTTTTTAT
GCCCGCCCCCGCCCCGCGCTGAGAAACGAACACAGTTCCTTGGCAAGAAC
CGCATAGACTCTTAAACACTGAGTCGTTTCTCCAGTCCTAGGTTTTGTTT
GCTTTTGCTTGATTGTCTGCTTTGTCTTTGATTATTTGATCACCTTCACA
TTAAACTCCCCTCTCGCCTTTATCGATATCCCTTGAAAAACTTCTTAACA
CGCACCCTGCACATTACATTTTTTTTATTTTTTTGCCCCCTATTACCCCA
TTTCTAACGAATTCTTTTATTTTTCACATTTTTTCACACCTCCCTCCATT
TTTCACACTTGTTTATGTACACATTTCTTTGCTCGCCAACTTTTCCTCCC
TCCCTTTTTTTCCTATCCCTTCTATTTTTTACCCCCCTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGCTAAAACTATCTGTTCCTGA
GCATTTGGGGGGGGGTGGCAGACTTTTAATGACTGTTTCTATTTCTTTAG
GGGTTATGGGAGTGTTTAGATTGNTTATNNNNNNNNNNNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTNTTTTTTTTTTTTTTTN
NTTTTTTTTTTNTTTTTTTTTTTTTTTTTTNTTTTTTTTTTATTTTTNTT
TTTTNNTNNTNTTTTTTTTTTTTTTTTTTNNTNNNNNNNNNNNNNNTNAN
NNNNNNNNTTTTTTTTTTTCTTCCCCNNNNCCCCNNCCCCATTTTTTTTA
ATTTATAATATANTAATTTTNTTTGTTCCCCCCCAAAAAAAAAAAAAAAA
AACCTCCTGGGGGTGGGGGGTGGCCGTCCTCCCTCATTTCTCCCCTTTCT
ACAACCCCTCCCTTTCCTTTCTTATTTTATTCTACTATCTATCTTACTTT
CTCTTACCATACCACTCTTTTATTCTCCCCCATCACCGCCCTTTTCAGCT
TAATCCTTCTTTCTTTTTGCTTTACCTTTCTAATTTTAATTTTACAACTC
ACTATTTCTACTCCCCTTCGTCTCATCATCAGCCCTCTAGTTTCACTTCC
CATTTGTTTTTTTTCCACCCTCACTCCTCTTCCCTCCTTAATCTTTCGTG
TTTACTCTTGCACCCCATTATTACCACCACTCTTTTTGTACCCCTCATTT
CTTCCTACCCTTTCAAATACACCCACTTTACAATCCCACATTTTCACCTT
TACATTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_b11.b1 MSMg01no171_b11.b1 CHROMAT_FILE:
MSMg01no171_b11.b1 PHD_FILE: MSMg01no171_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:14 2005
         (319 letters)



>mm_chr6_110403217_110403934
          Length = 718

 Score =  563 bits (291), Expect = e-165
 Identities = 309/315 (98%), Gaps = 1/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccactcacaaagatcttattagtcttctgtatgttcatccaacacagggaaaa 64
           ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctccactcacaaagattttattagtcgtctgtatgttcatccaacacagggaaaa 264

                                                                       
Query: 65  aatgaaacaacactttatttttaatattgaaatcagtatatttttttctccaaaacaaga 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aat-aaacaacactttatttttaatattgaaatcagtatatttttttctccaaaacaaga 323

                                                                       
Query: 125 ctctatattatattttacctttggcacacttgaatgttgacaattttgtgtggctgcttt 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctctgtattatattttacctttggcacacttgaatgttgacaattttgtgtggctgcttt 383

                                                                       
Query: 185 aaagtattaaaatccttcaagataaacaagaagtaaaccattgactcttaaggattaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagtattaaaatccttcaagataaacaagaagtaaaccattgactcttaaggattaatt 443

                                                                       
Query: 245 taaagtacggatatatgtctgtggggggcctgttctcctgagtgcaatgccttgggttga 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 taaagtacggatatatgtctgtggggggcctgttctcttgagtgcaatgccttgggttga 503

                          
Query: 305 tagcttggagctgca 319
           ||||||||| |||||
Sbjct: 504 tagcttggaactgca 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space:   219790
Effective search space used:   219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)