BAC Information

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BAC

Clone NameMSMg01-171H16
Chromosome6 (Build37)
Map Location 109,729,280 - 109,729,590
singlet/doubletsinglet
Overlap genenone
Upstream geneArl8b, Edem1, EG627371, LOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171H16.T7 (MSMg01no171_h16.b1)MSMg01-171H16.TJ (MSMg01no171_h16.g1)
ACCAG367709AG367710
length737735
length of high quality
(start - end)
317 (45 - 361)284 (78 - 361)
definitionCHROMAT_FILE: MSMg01no171_h16.b1 PHD_FILE: MSMg01no171_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:43 2005CHROMAT_FILE: MSMg01no171_h16.g1 PHD_FILE: MSMg01no171_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTCTTTCTAGAGGCACTATTGGGCATTGTAACAGAAACAAACAAA
CAAAAAAACAAACCCAAATATGTCCACATTGATGGATGAACTATTGATAT
TCTCCACAACAAATACTTGAATACTTTCTATTACTAAACATGATACAAAT
GAATAAGTAAATACAAATGAATAAGTAAATAAAACCTAGATATTGAGTAC
TTGAATTAAATATAACATCATAAAAGACCCCCAACAGTACCCACACAAAG
ATAAGGACAGTAACTATGAAAATGCCGAAGTATAAAAAGGCAAGAAGTTC
TGAAACCTATATTTATCCTCCCCACCCCCCCAAAGCACTAAGGTAATATC
TCTGCCCTTTGGACCATGTAATCTGCTGCCAGTTTCCAAATAAGCATGGT
ATTTGTAATCCATTCTCCTTGAGCTCAGCACATAGTTATTATAATAGTGT
TTATAGTTATATATATAATAGTTGTTTATATATAATAGTTATTATTTTTT
TTTTTNATTTTATAACTATTTTTTTACTATTTTTATCCTTTTATTTAACT
CAACCTTTCCATTTCTTCCTCTCCTTTTTTCCCTTTTCTTATTCTCTTCC
TTTTCATCCTCTTTCTCTTATTATCCCCACCTTTCCTTTTCTATCTCTTC
CCCTTTCCTTTCAATACCCCCCCTCCTATCTTCTTTN
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTGGAAGATTTTACTTTGAT
GGGTATGAAGTGCCCCTCCTTGTCCTTTTTGATGACTTTGGGTTGAAAGT
CAATTTTATTAGATATTAGAATGGCTACTCCATTTTCTTGGAAAATTGTT
TTCCAGCCTTTCATTCTGAGGTAGTGTCTGTCTTTTTCCCTGAGATGGGT
TTCCTGTAAGCAGCAAAATATTGGCTCCTGTTTGTGTAGTTAGTCTGTTA
GTCTATGTCTTTTTATTGGGTAGTTGAGTCCATGGATATTAAGAGATATT
AAAGAAAATTTTTTGTTGCTCCCCCCCCCCCCCCGCTGTTAACATTGGCA
TTCTGTTCTTGTGGCTGCCTTCCTAAAAAAAAAAAGAGGGATTACCTTCT
TGTGCTTTCTAGGATGAGCTTTTCGTTCTTGTATTGTTTTTTCTCTGTTA
TTATTCTTTGCATATTTGTAATTCTTGCACCGATTTTGCCAGAATTCGCC
CACGCTTCGTTATACCTTATATTTCTTTTCTTATTTTATCTGTAATTCCC
TCTTTTTTTATATTCTTTTCACCATCCCCTCCATATCCCCCTAAACTTCT
TTTTCTTATCTTCCTCCCACACTTTTCTTTCCCTTTTTCCTTTTTTCCCC
TCTTTTTCTCTTCTCCTCCCTTCTTTCTCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_h16.b1 MSMg01no171_h16.b1 CHROMAT_FILE:
MSMg01no171_h16.b1 PHD_FILE: MSMg01no171_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:43 2005
         (317 letters)



>mm_chr6_109729076_109729792
          Length = 717

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtctttctagaggcactattgggcattgtaacagaaacaaacaaacaaaaaaa 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattctgtctttctagaggcactattgggcattgtaacagaaacaaacaaacaaacaaa 264

                                                                       
Query: 65  caaacccaaatatgtccacattgatggatgaactattgatattctccacaacaaatactt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaacccaaatatgtccacattgatggatgaactattgatattctccacaacaaatactt 324

                                                                       
Query: 125 gaatactttctattactaaacatgatacaaatgaataagtaaatacaaatgaataagtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatactttctattactaaacatgatacaaatgaataagtaaatacaaatgaataagtaa 384

                                                                       
Query: 185 ataaaacctagatattgagtacttgaattaaatataacatcataaaagacccccaacagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataaaacctagatattgagtacttgaattaaatataacatcataaaagacccccaacagt 444

                                                                       
Query: 245 acccacacaaagataaggacagtaactatgaaaatgccgaagtataaaaaggcaagaagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acccacacaaagataaggacagtaactatgaaaatgccgaagtataaaaaggcaagaagt 504

                      
Query: 305 tctgaaaccta 315
           |||||||||||
Sbjct: 505 tctgaaaccta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)