BAC Information

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BAC

Clone NameMSMg01-172M07
Chromosome6 (Build37)
Map Location 75,254,449 - 75,254,616
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306
Downstream geneLOC100042942, LOC668143, EG668145, EG546907, LOC100042952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172M07.T7 (MSMg01no172_m07.b1)MSMg01-172M07.TJ (MSMg01no172_m07.g1)
ACCAG368580AG368581
length737724
length of high quality
(start - end)
313 (43 - 355)172 (136 - 307)
definitionCHROMAT_FILE: MSMg01no172_m07.b1 PHD_FILE: MSMg01no172_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:18 2005CHROMAT_FILE: MSMg01no172_m07.g1 PHD_FILE: MSMg01no172_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAACAAAGAAATCTTGAATGGCTGAGAAAAACCTAAAGGAATGTTCAA
AGTCCTTAGTATTCAGGGGAATAAATGCAAATCAAAATGACCCTGAGACT
CAACCTTATATCAATCAGAATGGCTAAGGTCAAAACCTCAGAGGACTGCA
TATGTTGGTAAGGATGCGGAACAAGAGGAACACTATAACATTACTGGTAG
TATTGCAAACTAGTACAACCATTGAAAATCAACCTGGAGTTTCTTCAAAA
AAAAAATCTTCCTGAATATTCAGCTATACCACTCTTGGTAATATACCCAA
AAGATGTTTCTTTATGCCCNAGGCGTANCCGTTCCACTATGTTCATAGNA
GNTTTGTTTGGGACACCCATAAGATAAAAACAACACAAATGTCCCTCAAC
AAAGAAATGTATACCGAAAATGTGGTTCATTTACCCATTGGAATACTACT
CAGCTATTAACAATGAGGACATCCTGAGTTTTTCATGCACATGGATGGAA
CTAGAAAATATCGTCCTGAGTGAGGTAATTCCGGACCCAAAACAAAAATT
CCCGGCATGCACTCACTACTAAGTGGCTATAACCCCCAAACCAACCCAAT
ATTTACAGCATACCCCAGATACCGTCCACAGAATTCCAACACGTCCCCAA
TCTGAACGGCCCCCACTCAGCATACCTTCACACCACN
AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTATTGTGGTCAATTTACATGAACTT
GCTTAGAGCTAAAAATTAACTCCATAATTAACAACGTTTACTGAATGAAA
TGGATTTTTCTATCTAGAACAATTACATTCTTTTCACACACTATTTTCAA
ATGAACAATATAATTGTAGGAAACAAATTATTATTTGCCAAATTACACAG
GTAGATATTTACATAGTTTTATATAAGAGTATTTATGTCCTTCATACACA
TCATTAATACAAACAAACATTTCCCCAGAAAAATATTATCTCAAACTGTT
ATATGAATATTTTTTTCCCCCCCCCCCACCACATACATAGGTACATACAT
ACACACATATTATGCCCACAACATAAACAATTATGATATAATTTATCTTA
CAGAAAATAAAGTTAGTTTCAGATCACAGGATTTTAAAGTTTGACGCTTC
CTTATTTTTCTTCGTCATCTCGCATAAGTCTTACAATATCTCTGATGTCT
CTTCTTTTTCAAATTTGCCACTTATTCGCGTGCGTGCTGTGCGTGTGTGT
GTTTGTTGTCCCCGTCTCTTTAACCTTTCCTCTCTTTTTCCTAACCTCTA
TTTTCCCCATAACCCCTATTATCTATCCTTCTACCTTTTTTCCCTCTCTT
TTTTTCTTTCCTCACACTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_m07.g1 MSMg01no172_m07.g1 CHROMAT_FILE:
MSMg01no172_m07.g1 PHD_FILE: MSMg01no172_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:18 2005
         (172 letters)



>mm_chr6_75254249_75254820
          Length = 572

 Score =  310 bits (160), Expect = 4e-89
 Identities = 166/168 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttactgaatgaaatggatttttctatctagaacaattacattcttttcacacactatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtttactgaatgaaatggatttttctatctagaacaattacattcttttcacacactatt 309

                                                                       
Query: 61  ttcaaatgaacaatataattgtaggaaacaaattattatttgccaaattacacaggtaga 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttcaaatgaagaatataattgtaggaaacaaattattatttgccaaattacacaggtaga 249

                                                           
Query: 121 tatttacatagttttatataagagtatttatgtccttcatacacatca 168
           |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 248 tatttacatagttttacataagagtatttatgtccttcatacacatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)