BAC Information

Click to search

BAC

Clone NameMSMg01-172M23
Chromosome6 (Build37)
Map Location 149,378,970 - 149,494,883
singlet/doubletdoublet
Overlap geneBicd1, LOC667182
Upstream geneTmtc1, EG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik, 2810474O19Rik, LOC665426, LOC622481, LOC665441
Downstream geneLOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172M23.T7 (MSMg01no172_m23.b1)MSMg01-172M23.TJ (MSMg01no172_m23.g1)
ACCAG368605AG368606
length711716
length of high quality
(start - end)
316 (50 - 365)239 (127 - 365)
definitionCHROMAT_FILE: MSMg01no172_m23.b1 PHD_FILE: MSMg01no172_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:21 2005CHROMAT_FILE: MSMg01no172_m23.g1 PHD_FILE: MSMg01no172_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,378,970 - 149,379,278)(149,494,647 - 149,494,883)
sequence
NATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTATCATTTCCATTATAGTTATTCCTTGTAACCATAATAT
AAACATAAATTTTCTTAGAAAGTCTGGCAAATTTTTGTATTTTAGTCAAC
AATTGAAAAATATAGGATATACTGCATTATAACTTCATGTAGATATCAAA
AAATGGTTCTGGGATAGTGGGAAAGGTGGTAGTAGACATTTTGTTGAATA
TAGGACTTCATTGATATCAAAGAGTGTTTGAGATTTATATAACAGAAATT
TCAGTAAAAAGCAGGAGACAATGTATGTTCCCAGACTGAAGTGCAGGTTC
TCAGTTCCTTCTTATTTTATTGCACACTCCCCACTGGGTCCACATAGATA
CCACCAGTAGACAGGCACTTAGCTTTCATAGAACTATCTATGCCTTGAAA
ACCCTTCTGGCTATTCCAGAACCCCTAGCTGAGTAGTATCTGCTTACCAG
ATGCAGTTCATTCAATACTTATAGACTAAGTCTATTGGATTATGGCACAA
CTTTGTTCAAAGTCCTTAATGTTTCATTTTTATTAAGTTGGAGATATGTG
CATGACACCACAAGCACAATAAATAATAAATAGTACATAACAAATAAATA
AATAATAAACAGTATTTATTTCACGAGTAGAAGAATTAACGGTTACGCTC
CCAGGCACTCC
ATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTACTCATTTAATATGTAAGCCTCTCT
CCTATTTTTATGTATCATTTCACCAATATGGCAATTTTACTTTGATATCT
TCATTTTAGACTGGTAACAATAAGGCTATTTCATACATCTTAATGGATGA
TTTTCAATTTTTTAACCAGTTATGAATGTAAAAAATTGTATAACTAATTC
TCTATTTGCCTTAAAAAATTTTAAACAGCTGGTTGTTTGTCAAGATTCAG
ACATAGCACTTACCCTGGCTTTATGTATGAAAAAGAAGTTTAGTCTAACA
GAAGGCATTTTTATTGTTCTCGCCCCCCCCCTGTCACCACTGTATATTAA
GCAGATGAATGCATCCATTTCCTGAAAATTGACAAAGATCAGGCTTGAAT
TTGAGGCTTAAGTTTAGAAAAACTTTTCTTTCTTCTGTATAAGAATTTTA
TTTCCACATTCTCTGACACATTTAGGTGTCTATCCTATTGCTTTCATATT
CTCTTTTTCCCCTGGCACCTCTTCATTTATGTTGCATGACTTTTTAGTAT
CTTTCCTTCAGCAATGAAATTAAAAAGAAAAAGATAAGAACCCTCCCCTT
CACTGCTCTTCTCACTCCTTTCAAGACAGTAACTTGTTCTGTGGCCCCAT
TGGCCTCAAACTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_m23.b1 MSMg01no172_m23.b1 CHROMAT_FILE:
MSMg01no172_m23.b1 PHD_FILE: MSMg01no172_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:21 2005
         (316 letters)



>mm_chr6_149378767_149379482
          Length = 716

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttatcatttccattatagttattccttgtaaccataatataaacataaattt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttatcatttccattatagttattccttgtaaccataatataaacataaattt 263

                                                                       
Query: 64  tcttagaaagtctggcaaatttttgtattttagtcaacaattgaaaaatataggatatac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcttagaaagtctggcaaatttttgtattttagtcaacaattgaaaaatataggatatac 323

                                                                       
Query: 124 tgcattataacttcatgtagatatcaaaaaatggttctgggatagtgggaaaggtggtag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcattataacttcatgtagatatcaaaaaatggttctgggatagtgggaaaggtggtag 383

                                                                       
Query: 184 tagacattttgttgaatataggacttcattgatatcaaagagtgtttgagatttatataa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagacattttgttgaatataggacttcattgatatcaaagagtgtttgagatttatataa 443

                                                                       
Query: 244 cagaaatttcagtaaaaagcaggagacaatgtatgttcccagactgaagtgcaggttctc 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 cagaaatttcagtaaaaagcaggagacaatgcatgttcccagactgaagtgcaggttctc 503

                    
Query: 304 agttccttc 312
           |||||||||
Sbjct: 504 agttccttc 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no172_m23.g1 MSMg01no172_m23.g1 CHROMAT_FILE:
MSMg01no172_m23.g1 PHD_FILE: MSMg01no172_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:21 2005
         (239 letters)



>mm_chr6_149494447_149495085
          Length = 639

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatggcaattttactttgatatcttcattttagactggtaacaataaggctatttcatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tatggcaattttactttgatatcttcattttagactggtaacaataaggctatttcatac 378

                                                                       
Query: 61  atcttaatggatgattttcaattttttaaccagttatgaatgtaaaaaattgtataacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atcttaatggatgattttcaattttttaaccagttatgaatgtaaaaaattgtataacta 318

                                                                       
Query: 121 attctctatttgccttaaaaaattttaaacagctggttgtttgtcaagattcagacatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attctctatttgccttaaaaaattttaaacagctggttgtttgtcaagattcagacatag 258

                                                                    
Query: 181 cacttaccctggctttatgtatgaaaaagaagtttagtctaacagaaggcattttta 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cacttaccctggctttatgtatgaaaaagaagtttagtctaacagaaggcattttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)