BAC Information

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BAC

Clone NameMSMg01-173B02
Chromosome6 (Build37)
Map Location 105,520,588 - 105,520,879
singlet/doubletsinglet
Overlap geneLOC100043350
Upstream geneCntn6, LOC384470, LOC100043716
Downstream geneCntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173B02.T7 (MSMg01no173_b02.b1)MSMg01-173B02.TJ (MSMg01no173_b02.g1)
ACCAG368787AG368788
length722703
length of high quality
(start - end)
321 (46 - 366)296 (57 - 352)
definitionCHROMAT_FILE: MSMg01no173_b02.b1 PHD_FILE: MSMg01no173_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:40 2005CHROMAT_FILE: MSMg01no173_b02.g1 PHD_FILE: MSMg01no173_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATGATAAAAGCAATATACAACAAACCAG
TAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGT
ACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCT
GATAAACAGCTTCGGTGAAGTAGCTGCATATAAAATAAACTCAAACAAGT
CAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGG
GAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGT
GACTCTAACTAAGGAAGTGAAAGATCTATATGATAAAAACTTCAAATCTC
TGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCA
ACGAATTAGAAGGAGCAATTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACCTCTCTTCAGGGTTGATGGGAAACAACTGCCTCAAAAGGGCC
CAACTTTTAAAGGCTTTCTTTGCTGTTGTTGCTTTGTGAAGTACGAATAC
CTGTGCTCATACACACACACACACACACACACACACACACACACACACAT
CATACACTCACTGATGATGGGGAATCACAAAGGAACTTAAACGATACATG
TGATAAGCTGTGTTTGAACACCATGTACTACCCATACTCCTAATGGGCAA
ATTATTATTTTTTTACTTTGATCATTATAATGTGATCAGCTTTATTTTAT
GTGCCCCTCCCCAACTCTTAAATTATTGAGAGAAGCAATCTGATTTGAGT
CAACATTTTCCTCCATAGCAGAATAGCCATATCTTTAGAAAGTTACAATG
TTCTATAATGTAGTACCTATATTTTCTAAGAAAGTTAAATGCTCAGTTTT
TAAAATGGTGTTATGCTGAAATTAACTGAAAAGGTTTGCTGTGAAAATTT
TAAGAAGGGTCTGAAAATTTTAATTGGTTAAAAAAAAGGGGCCCGAAAAA
AAAAAGGTCTTTAAAAAAAAGAAACAATTTTCTTTTGGAATTTTTTTTAT
ACACCCCGGAACACGCGCAAATAATTTAATACATTGAGCACTCTCTTATA
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_b02.g1 MSMg01no173_b02.g1 CHROMAT_FILE:
MSMg01no173_b02.g1 PHD_FILE: MSMg01no173_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:40 2005
         (296 letters)



>mm_chr6_105520233_105520928
          Length = 696

 Score =  530 bits (274), Expect = e-155
 Identities = 286/292 (97%), Gaps = 4/292 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctctcttcagggttgatgggaaacaactgcctcaaaagggcccaacttttaaaggctt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 acctctcttctgggttgatgggaaacaactgcctcaaaagggcccaacttttaaaggctt 588

                                                                       
Query: 61  tctttgctgttgttgctttgtgaagtacgaatacctgtgctcatacacacacacacacac 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 587 tctttgctgttgttgctttgtgaagtacgaatacctgtgttcatacacacacacacacac 528

                                                                       
Query: 121 acacacacacacacacac----acacatcatacactcactgatgatggggaatcacaaag 176
           ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 527 acacacacacacacacacacatacacatcatacactcactgatgatggggaatcacaaag 468

                                                                       
Query: 177 gaacttaaacgatacatgtgataagctgtgtttgaacaccatgtactacccatactccta 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaacttaaacgatacatgtgataagctgtgtttgaacaccatgtactacccatactccta 408

                                                               
Query: 237 atgggcaaattattatttttttactttgatcattataatgtgatcagcttta 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atgggcaaattattatttttttactttgatcattataatgtgatcagcttta 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)