BAC Information

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BAC

Clone NameMSMg01-173F04
Chromosome6 (Build37)
Map Location 134,186,975 - 134,187,223
singlet/doubletsinglet
Overlap geneEtv6
Upstream gene5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063
Downstream geneLOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173F04.T7 (MSMg01no173_f04.b1)MSMg01-173F04.TJ (MSMg01no173_f04.g1)
ACCAG368960AG368961
length724702
length of high quality
(start - end)
252 (46 - 297)296 (77 - 372)
definitionCHROMAT_FILE: MSMg01no173_f04.b1 PHD_FILE: MSMg01no173_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:58 2005CHROMAT_FILE: MSMg01no173_f04.g1 PHD_FILE: MSMg01no173_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACATCAAAACACAGTCCCATTTTTCCTGCAGTTAGTAAGTGG
AACAGCCCAGAACGTAGATGGCATTCTCCCCTTTCGGGGTTGGGGGAGGG
GGTAAAGGGGGGAACAGGAAGGGGACCTGCATTCTGATTTGGCCCACTGG
AGTTTCCTTTGTGTGGTCTCGCTCTTGAGGGGAACATTGCTCCTCCCATC
ACTACCAAACCCAGGTTTCTAATGAACCACCTTGGAACCATATACAGGTT
TGGAGAAATAACTAAAGCTTTTTGTGTGAAATTGAGTCCTGCCTGCTATA
AGNCAGTTTAATAATTCCCCGAACTNGCCCCACAAAANAGACATTTGTAA
GATCGTTGGGTCTGGTTATAAAAAAAAAAAAAAAAAGTTGAGGGGGGAGA
GACTAAGCCATTACGGGGCCATATGTATGTTTTCCGCCGCCTTTGTCGTT
TTTGCCCAGCGCTATTTTTTTCCCTTTCTCCACAATTATATTCTTTTTAC
AGCTTCCCTTATATTTCGAATTTTTGTTTTCTCCTCCCTAAACCTTTTTC
TACCCCCGCCGGCGCATCAACTCCTTAATAACCTTCTTCCACCCTCGCTT
GTCACTTTTTTCGCGTTTCTATATAACCCGAGGGATTCCTACGCCAATTA
TCCCGTAGCTTCTTTTCTACCAAC
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATAATTCTCGTGTTTTTTTAAAA
ATAGTTTTGATTCTTTCATGAGATTGCCCATTTATTTATTTATCTATCTA
TTTATTTTTAAAGATTTATTTGTTTTATGCACATGAGTACACTGTTGCTG
TAGACCAGAGGAGGGCGTTGGATCTCATTACAGATGGTTGTGAGTCACCA
TGTGGTTGCTGGGAATTGAACTCAGGACCTTTGGAAAAGCAGTCAGTGCA
CTTAACTGCTGAGCCATCTCTCCAGCCCCAAGATTGCCCATTTTATTAAT
TGCTAGTGTTTTTTTTTTTCCCCCCACCCCATGAACATTTTTTTTTGTGG
TCACCTTAAAGCTGTGTCTGCCAAAGAACAGAGCCCCCTCCTTACTCATT
TCTTTGAGACAGGTTGGGCCTGAACCACTATCCAGTTGCACATGACCTTG
AACTGATATGCTTGCCTGGCCTTGTCCTCCAAGACGTTTCTGTTTGCTTC
TATTTACTGCTTTATTTCTTTGTTGTTAGGGGTTCAGTGATTTTTTAAAT
TATTACTATGTGCTAAATCTCACGGGTTTTATCGTCTTCTTTTAAAGAGT
CTTGCATTTTTCTTGGTCAGCAGTTAGTCTAGTGGATCACCCAGGCATAT
GA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_f04.b1 MSMg01no173_f04.b1 CHROMAT_FILE:
MSMg01no173_f04.b1 PHD_FILE: MSMg01no173_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:58 2005
         (252 letters)



>mm_chr6_134186772_134187423
          Length = 652

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccacacatcaaaacacagtcccatttttcctgcagttagtaagtggaacagccc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccacacatcaaaacacagtcccatttttcctgcagttagtaagtggaacagccc 263

                                                                       
Query: 64  agaacgtagatggcattctcccctttcggggttgggggagggggtaaaggggggaacagg 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaacgtagatggcagtctcccctttcggggttgggggagggggtaaaggggggaacagg 323

                                                                       
Query: 124 aaggggacctgcattctgatttggcccactggagtttcctttgtgtggtctcgctcttga 183
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaggggacgtgcattctgatttggcccactggagtttcctttgtgtggtctcgctcttga 383

                                                                       
Query: 184 ggggaacattgctcctcccatcactaccaaacccaggtttctaatgaaccaccttggaac 243
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 ggggaacattgctcctcccatcactaccaaacccaggtttctaaggaaccaccttggaac 443

                    
Query: 244 catatacag 252
           |||||||||
Sbjct: 444 catatacag 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)