BAC Information

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BAC

Clone NameMSMg01-173K10
Chromosome6 (Build37)
Map Location 41,521,420 - 41,521,705
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13
Downstream geneEphb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173K10.T7 (MSMg01no173_k10.b1)MSMg01-173K10.TJ (MSMg01no173_k10.g1)
ACCAG369195AG369196
length710707
length of high quality
(start - end)
316 (37 - 352)286 (59 - 344)
definitionCHROMAT_FILE: MSMg01no173_k10.b1 PHD_FILE: MSMg01no173_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:22 2005CHROMAT_FILE: MSMg01no173_k10.g1 PHD_FILE: MSMg01no173_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCA
GAAATTTTGGATATTAATCCTCTGGAAGAGTTAGGGATGGTGAAGATCGT
TTCCCAATCTGTGGGTTGCATTTCTTTTATTGAATGTAACCTTTGCCTTA
AAAAAGTTTTGTGGCTTCATGAGGTCCCATTTATCAATTGTTGATCTTAT
AGCCTATGCCATTGATATTCAATTCAGAAAATTGTCTCCTGTAACAATAG
GTTCAAGGCTATTTTTCACTTTCTCTTCTATGAGATTTAGTATATTCAGT
TTTACACTGAGGTCCTTGATCCACTTGGACTTGAGCTTTTTGCAGTGTGG
TATTTATTTTTTCCCCNTTCCATCCCCCAACATATAGACATCTAGTTAGT
CCAGCACCATTTGTTGAAGAAACACATCTTTTGTCCAATGTAAGGCTTTT
GTTTCTTTACCAAAAATCAAGAGTCCTTATGTGTGTGGCTCTATTTCTGG
GCCTTTAATTTGATTCCACTGATCAACCTTTCTGTTTCGGTACTAATACC
ATGCAGTATTTATCACTATTGCTCTTAGCACAGCTTGAGGTCAGGGATGA
TGATTCCTGCTGAAGTTCTTCAATCTTTCACGATTTTGTCTATCCTGCGT
TTTTTGTTTTCCATATGAGATTAAAAATTGCTCTTCCAAGGAATACAAAA
ACTTATGCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAGTCTTAGGATACAAATGTTAGGTCCAAATCAGGCTCCGAAA
ATGGCGATGCTGGTCACAATGTTCTAAACAGGAGGATTCTGTCTGGATAA
ATAAAATAATTGTTATTAGGTAAACAGGAACCTAAATTCAGCATTTCTCA
GGAATCTGAGGGATTTTGTTTACCAGGACTTCCCTTAATCTACACCCAAA
GGTCAACTACCTCAGGCAAGGACTTCTAGTTCCAGGTTAATCCAAACAGC
AAATTATTGTGAGAAATGTAGTTCCATTTTCAAATGTTAACCTTGTTCTA
TCACACCCACACACCCAGCAAGTCCATTTACAACAACTAAAAATAAAAAT
GTTTGAGAACAGATGTCCCTAAGGAACTGAATTTGAACTAAAGGTTTTCT
GCACAACAAAGGAAATATTAACAAAATAAAAAAGAAACCCTTGAAATGAA
GCAAAATATTTGAGTAATATCTAAATTATGGAAGGAATTTATAGAGCTCA
ACTATGAAAGTAGAGATTCAAAAAAATCCATTTAAAAATGGTAATTTTTT
TTCCTCAGAGCATAACCACACCCCTTAGTTTTTAAGCATGTGAAGTAATG
CTCAATTTGCTGTCCTTAGGACTCATAAATCAAAGGGATCGATCCCTAAA
GCTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_k10.g1 MSMg01no173_k10.g1 CHROMAT_FILE:
MSMg01no173_k10.g1 PHD_FILE: MSMg01no173_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:22 2005
         (286 letters)



>mm_chr6_41521220_41521905
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcttaggatacaaatgttaggtccaaatcaggctccgaaaatggcgatgctggtcaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 486 agtcttaggatacaaatgttaggtccaaatcaggctccgaaaatggcgatgctgatcaca 427

                                                                       
Query: 61  atgttctaaacaggaggattctgtctggataaataaaataattgttattaggtaaacagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atgttctaaacaggaggattctgtctggataaataaaataattgttattaggtaaacagg 367

                                                                       
Query: 121 aacctaaattcagcatttctcaggaatctgagggattttgtttaccaggacttcccttaa 180
           | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 366 agcctaaattcagcatttctcaggaatatgagggattttgtttaccaggacttcccttaa 307

                                                                       
Query: 181 tctacacccaaaggtcaactacctcaggcaaggacttctagttccaggttaatccaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tctacacccaaaggtcaactacctcaggcaaggacttctagttccaggttaatccaaaca 247

                                                         
Query: 241 gcaaattattgtgagaaatgtagttccattttcaaatgttaacctt 286
           |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 246 gcaaattattgtgagaaatgcagttccattttcaaatgttaacctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)