BAC Information

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BAC

Clone NameMSMg01-173M04
Chromosome6 (Build37)
Map Location 118,992,106 - 118,992,390
singlet/doubletsinglet
Overlap geneCacna1c
Upstream geneRasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
Downstream geneDcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173M04.T7 (MSMg01no173_m04.b1)MSMg01-173M04.TJ (MSMg01no173_m04.g1)
ACCAG369272AG369273
length688703
length of high quality
(start - end)
513 (19 - 531)289 (56 - 344)
definitionCHROMAT_FILE: MSMg01no173_m04.b1 PHD_FILE: MSMg01no173_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:29 2005CHROMAT_FILE: MSMg01no173_m04.g1 PHD_FILE: MSMg01no173_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCCTATTTCGAGAGGATCCGCGGAATTCTTGCAGATTCCCCCCAAGAG
AGCAGATGTGTGAAGCTATGAGGATGGGGCCTAAGTTAGAGTTGAAAACT
GTGGTGTTTTTAGGGAAAATGACCCCCATGGTATTTGACACTTGGTCCCC
AGTTGATAGTGCTGTTCAGATGCTATTGGATGTTTAGGACATGGAGCCTG
GCTAGAAGAAGTACATCTCCAGGAGCCAGATTTGGGCGTTTATAGCCTTC
CCCAGTCCTAGTATGCTCTCCACTTTTTGGCCTCAGTTGCAGATGTTATC
TGTCAGCTTCCTGCTCTGGCAATCTGCTTTCAAGCCTCCCCTCCTGTTAT
GGACTCTCCCTCTGGAGCCATAAGCCAAATGATAATACTATTTATTCCAT
AAACTGCTTTTGGTCATGGTGTTTTATCGAAGCAACTAGAAGTAACTGCG
GGGGATTAGAGATGCTGAGAGCAAGGTGTATGACCTGAGGAAGACTGTAA
CTGCTGAGCAGGAGTAAGGCATGTGGGCTGCAAGTGGCAAGGCCACACAG
GGTGGAGGTCACCTAGTCCTTTGGTGCCGGTACCAGGCCAGCTTGGTGTA
GCTACAGGGTTTACTGATTGCCCTGCTGGGTTTGGGTCTTGAGTTGGTCC
AATCTTTCCTTACTATTTTTCTATTCATCTCTTTTGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCATGCCAGGAGGTCACCGCCGTGTCCCTCTCCATTGGGGCACTT
TTTCTAAGACTATCTTCCCTTCTTGTGCCTCCCAGGGTGTTCCCTCAGTG
AGATCTTCTCGGGCCCACTGGAAGCCACAGAAGCAATCTTTTAGAAAGCA
AAGGGTCCTGCAGTCACTCAGTTATTGGAGCTTCTTCTAGCCCCACAGGG
ACACCTGCTCCTTTGGAAGCTGGTAGCAGCTAACTAACCATCCCTTGGAA
CAAACTCCAGATGCCTCATCAGGGCCAAGGTACCTCTGCCCTTTTTCTTG
TCGCCCACCTGACTCTCAGTGTGAGAACTACTCTGAGTTCCTCTCACCAT
GGAGTCCTTGCCCTGCTCTGCTCTGCACCAGGATTCTCCACAGGTTTGCT
GCCCACTTGGGTCCTCACTCCTATTCTCTGCCCTGGCTCCTGTGACACCT
CCACAGGGAGCCCTGCCATGCTTACCCCCTGCCAACTCTTAACACAACTC
TCCCTTCGCCTCTTTCGCGCTGTCTATGATGCTCTGCGCTTATTTTATTT
ACAATTCTGCCTGCCTACTGGGTTTCCTGGCAACATCACCAAACAGGGCT
TCCAGAAAGAATCTTGTGGTTAGGCAGGAAGGTTTAGTTCTGGGGAACAA
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_m04.g1 MSMg01no173_m04.g1 CHROMAT_FILE:
MSMg01no173_m04.g1 PHD_FILE: MSMg01no173_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:29 2005
         (289 letters)



>mm_chr6_118991906_118992593
          Length = 688

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%), Gaps = 1/286 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgccaggaggtcaccgccgtgtccctctccattggggcactttttctaagactatct 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tcatgccaggaggtcaccgccgtgtccctctccattggggcacgttttctaagactatct 260

                                                                       
Query: 61  tcccttcttgtgcctcccagggtgttccctcagtgagatcttctcgggcccactggaagc 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tcccttcttgtgcctcccagggtgttccctcagtgagatcttctcgggtccactggaagc 320

                                                                       
Query: 121 cacagaagcaatcttttagaaagcaaagggtcctgcagtcactcagttattggagcttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagaagcaatcttttagaaagcaaagggtcctgcagtcactcagttattggagcttct 380

                                                                       
Query: 181 tctagccccacagggacacctgctcctttggaagctggtagcagctaactaaccatccct 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 tctagccccacagggacacctgctcctttggaggctggtagcagctaactaaccatccct 440

                                                         
Query: 241 tggaacaaactccagatgcctcatcagggccaaggtacctctgccc 286
           ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tggaacaaactccag-tgcctcatcagggccaaggtacctctgccc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space:   190120
Effective search space used:   190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)