BAC Information

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BAC

Clone NameMSMg01-174H09
Chromosome6 (Build37)
Map Location 21,375,987 - 21,376,299
singlet/doubletsinglet
Overlap geneKcnd2
Upstream geneLOC100040838
Downstream geneLOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174H09.T7 (MSMg01no174_h09.b1)MSMg01-174H09.TJ (MSMg01no174_h09.g1)
ACCAG369752AG369753
length736806
length of high quality
(start - end)
320 (46 - 365)61 (80 - 140)
definitionCHROMAT_FILE: MSMg01no174_h09.b1 PHD_FILE: MSMg01no174_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:20 2005CHROMAT_FILE: MSMg01no174_h09.g1 PHD_FILE: MSMg01no174_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCTCCCAATCCTCTGCTGAAACAGAACATTGACTAATGATGATT
TCTCTAACAACATTAGCGCGGTTAGAATCTCCCATGTCCTTTTGTTGAAG
TTTTCTGACACTGGGGAACTAAGAATGAACTCACAGAACATATTTAATGC
TAAAAAGCAGTATATCTACTAAAGACACTTAAAATGCCAGAATGAAATTA
TATGTATCACTTCACTGTGAACAGAATTTAAACATGTTACTCATGGACAA
AATCTTGAATCCAATTTTAAATTTCAAATACACATCTCTCTAACATTATA
TTCAGCCAATGGATTTTCCCGTTCCCTTACACAGGTATGACAAAGATGGA
GAACTGGGCTTGACCAATGAAGGGATCCAATTTATATATGTTTTGTGAGG
TCCTCATGCTTGACACCTAAGGAATTTATATCAGTAAAATGCATAACAGA
TGAGAAACTAGTAAGTTTTTAATTTAATATTTAGTGTACGGTTGATAATT
CAAAATTCTGAACTGTGAGTATGAGAGATATCATATATTTCCATATGTAC
ATGTCTGTCTTTCCAGAACATGTTATCACCCAGAGACTATGTTTTCTATG
TTCTAATATGTTAACACTAGGGATTTTAAGGTCAGCAGTGTCTATGCTTT
AAGTCATGGATCAATGAAGAATAATCCTGAAGCTGG
NCATGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTCCTCTGGGGCTAAAAT
CTCTCCATCTTCCCTTCCCTTCCCTCCCCTTCCCTTCGCTTACCTTACCT
TACCTTCCCGTGGCTTGGGTGCGCGGGGCGGCGGGGGGGGGGGGGGGCGG
GGAGGGAGAGTAGGGTGCTGGGGGAGGGGGAGGGGGGGGGGGGGGCTGAG
GGGGGGGGTGGGGGGAGGGGGGGGGGGGGGAGGAGGGGGGGGGGGGGGGA
GGGGGGGGCCTGAGGGGAAGGGGGGCGGTTGTTTGTAAGTGGGGGGGGGG
GGGGGAGGGGCGGGGGGTTTGGGGTGGCTCCCAGGGCGAAACGCCGGGGG
GAGGGTGGGGTGGGGGGGGGGGGGGGGGGGGGGCCCAAGAAAAAAAAAAA
AAAAAAGGGCGGGGGGGGGGGGGGGGTCCACAGGGGGGTGCGAGGGGGTG
GGCGGTTTGGGGAGGGGGGGGGGGGGGGGTGGGGAATGGGGAGGAGAGGG
GCGGGGGGCCGGAGGGGGGGGGGTGGGATGGGGTGGGGTGGGGGTGGGGG
GGTTTGGGGCGGGAGCGTGACCGGTGGGTTGGGGCGGGTGGTGAGGAGGG
GGGGGTGGGGGTGGGGGGGGAGCTGTTGTGGTGGGGCTGGTTGTTAGGGT
TGGGTAGGGAGAAGGTTGGGGGGTAGGGGGGGTTATGGGGGGGGGGGGGC
GGTGGTGAGGGGTGGGGTGCGGGTGGGGGGCGGGGGCGGGTTCGGGGTGG
CGGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_h09.b1 MSMg01no174_h09.b1 CHROMAT_FILE:
MSMg01no174_h09.b1 PHD_FILE: MSMg01no174_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:20 2005
         (320 letters)



>mm_chr6_21375784_21376503
          Length = 720

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagctcccaatcctctgctgaaacagaacattgactaatgatgatttctctaac 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattcagctcccagtcctctgctgaaacagaacattgactaatgatgatttctctaac 457

                                                                       
Query: 64  aacattagcgcggttagaatctcccatgtccttttgttgaagttttctgacactggggaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 456 aacattagcgcggttagaatctcccatgtccttttgttgaagttttctgacactggggag 397

                                                                       
Query: 124 ctaagaatgaactcacagaacatatttaatgctaaaaagcagtatatctactaaagacac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctaagaatgaactcacagaacatatttaatgctaaaaagcagtatatctactaaagacac 337

                                                                       
Query: 184 ttaaaatgccagaatgaaattatatgtatcacttcactgtgaacagaatttaaacatgtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttaaaatgccagaatgaaattatatgtatcacttcactgtgaacagaatttaaacatgtt 277

                                                                       
Query: 244 actcatggacaaaatcttgaatccaattttaaatttcaaatacacatctctctaacatta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 actcatggacaaaatcttgaatccaattttaaatttcaaatacacatctctctaacatta 217

                        
Query: 304 tattcagccaatg 316
           |||||||||||||
Sbjct: 216 tattcagccaatg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)