BAC Information

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BAC

Clone NameMSMg01-175C01
Chromosome6 (Build37)
Map Location 45,711,635 - 45,711,749
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream geneRbpsuh-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175C01.T7 (MSMg01no175_c01.b1)MSMg01-175C01.TJ (MSMg01no175_c01.g1)
ACCAG370211AG370212
length720722
length of high quality
(start - end)
246 (375 - 620)118 (188 - 305)
definitionCHROMAT_FILE: MSMg01no175_c01.b1 PHD_FILE: MSMg01no175_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:08 2005CHROMAT_FILE: MSMg01no175_c01.g1 PHD_FILE: MSMg01no175_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCGAACGNNGGGNGNAAN
ANNANATTTACTNCAGGAGGCNNCNGCACNGNNNCNGNANNNCNCAAAGN
NCAAGGNACTTTTTATACGGAAAAAGACGGCACAAANCCCGGNCAACAGC
NCNACACGCNAGCNCAGGACCAACACCACACGGGCGCAAGGAGCACAGNN
CCGCAACACACAACAACACNGAAAGACCAGAAAAGGCNCCACANCTATTT
TCATCATTCTTTCTGAAGATTTCTTAAAATATATCTATTATGCTTTCCAA
ACTTTTCCCAATATTTTTTTTTTTCCAGCGAACACAGCACCTACCTCCGA
GTCTAATTTATTACTCCCCCCTCCATTCATGTGATACTCTTGTAAATGAG
ATTATTTTTCTGACTTTTAGATTATATTAATATTATATGCTGTAGCTTTA
CTGAATGAATTATCAGTTCTAATGATCGTCTCATGTCATACGTATCGTTA
TCTACATGAAAAAGATAATGTCCATGGAAACTGGAGACTCCTTCTCTAAT
TTGCTTTTATTTTTCATTCTCTCTCTCTCTCCATTCCTCCATCCCTCTAT
CTCTCCTCTCTTTTTGTTTCTTTCTCTTCCCATTTATCACCACTAATTTA
TTATTTTCAAATTAGTATAATGACGCCTCTTGAAAATGAAAGTGTTAATA
AATGAACCCTTAACCCTGAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCCAGGGGGNGAAC
NANAGAAGGATGCTGGGAGCAGGGCCNNNCNCAGAGNAGGAGAANAAAGG
NGNCAAACAAATTAACCACGGAGGAAAAAGGNAAGGNGAAAACTNAAAAA
GAGGGAAGAANAAGGCAAAAAACTAAAAAAANTGAANTCACAACAAAATT
TAAGATTGGGTTAGTCTGTTGGGGATAGGTAATTAGGTGCTCTTTGTCTG
CTAATTAGCTGTGTCCAAAAGGTGAAATTGTTTCTTACTGTCATGACTTG
AGNTAGAGTTTTTTTTTGGCANGGGGNGNAANNNAAGGCNNCGGNCCNCN
ANACACCACCCCGCGAGGGNANAGAGGNGNNCAANCNCCCNCNAANNNGC
CGNNNAGAGAGACAGNNCCAAAANCCAAAGGGAAACGCGGNCGGNGNNNG
ANAACNGCANGANGAGCNNAAGGAGAAGNACAGAAGGNCCCAGAAGGNGG
CAGNCNCNGAACCAAACNCACCAAGAAAAGGCAGGNCAAAGNNCAGGGGG
CAGGAAGAGGGGCCGGCAAACCNAAGNCAAGCNAAAGCCCNCNCAGGNAA
ACAAGGGACCCGAAAGGAGACNCCCGCANAGAAAAGGAGGGCCGAAACCC
TTCAGAAAAAGGNNCAGGCAGGCCAGAAAAANNCAAAAACCGGGAAAAAC
ACCCACAAAAGACAANAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_c01.g1 MSMg01no175_c01.g1 CHROMAT_FILE:
MSMg01no175_c01.g1 PHD_FILE: MSMg01no175_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:08 2005
         (118 letters)



>mm_chr6_45711435_45711952
          Length = 518

 Score =  199 bits (103), Expect = 4e-56
 Identities = 112/115 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacaacaaaatttaagattgggttagtctgttggggataggtaattaggtgctctttgt 60
           ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 315 tcacaacaatatttaagattgggttagtctgttggggataggaaattaggtgctctttgt 256

                                                                  
Query: 61  ctgctaattagctgtgtccaaaaggtgaaattgtttcttactgtcatgacttgag 115
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 255 ctgctaattagctgtgtccaaaaggtgaaattgtctcttactgtcatgacttgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)