Query= MSMg01no177_h11.b1 MSMg01no177_h11.b1 CHROMAT_FILE:
MSMg01no177_h11.b1 PHD_FILE: MSMg01no177_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:03 2005
(339 letters)
>mm_chr6_47226237_47226977
Length = 741
Score = 542 bits (280), Expect = e-158
Identities = 322/346 (93%), Gaps = 20/346 (5%)
Strand = Plus / Minus
Query: 1 caaaggcaggttttctgaggttgaggtatcacatactatatgaattatgccaagggtatc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 431 caaaggcaggttttctgaggttgaggtatcacatactatatgaattgtgccaagggtatc 372
Query: 61 tgctgcatgcactcaagtcctgtgagagtgtagaagcccattgtcatccttctgaccaaa 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 371 tgctgcatgcactcaagtcctgtgagagtgtagaagtccattgtcatccttctgaccaaa 312
Query: 121 gacctatagggaatgaggctttgcacctgtctgttgaaatgatcttctgaaagaaatgcc 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 311 gacctatagggaatgaggctttgcacctgtctgttgaaatgatcttttgaaagaaacgcc 252
Query: 181 tttggtccaattcattgtgt--caaatatcatgaatgagaccaaactccccaaggcttca 238
|||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 251 tttggtccaattcattgtgtgtcaaatatcatgaatgagaccaaactcccc--g------ 200
Query: 239 caggaatggcc-----cttttaacctggcatgcagttcggagtggttccttagcacagaa 293
|||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 199 -aggaatggccacaagc----aacctggcatgcagttcggagtggttccttagcacagaa 145
Query: 294 atgggcgctagctgacttttggactcaggctttctgctgtttgttt 339
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 atgggcgctagctgacttttggactcaggctttctgctgtttgttt 99
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 741
Length adjustment: 9
Effective length of query: 330
Effective length of database: 732
Effective search space: 241560
Effective search space used: 241560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_h11.g1 MSMg01no177_h11.g1 CHROMAT_FILE:
MSMg01no177_h11.g1 PHD_FILE: MSMg01no177_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:03 2005
(565 letters)
>mm_chr6_58093318_58094282
Length = 965
Score = 719 bits (372), Expect = 0.0
Identities = 526/612 (85%), Gaps = 56/612 (9%)
Strand = Plus / Plus
Query: 9 acctatagtcagacagacagctcactttgaggccttaagaaatctgtgctttgtccagac 68
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acctatagtcagacagacaactcactttgaggccttaagaaatctgtgctttgtccagac 214
Query: 69 actatgtatatttgttacaaagaaatgaataaatgaagaatgaataagtagatacagctg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 actatgtatatttgttacaaagaaatgaataaatgaagaatgaataagtagatacagctg 274
Query: 129 cttacctaagctatctaatacctaaactggatgttgtgtcagccacagtacatgctgggc 188
|||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 275 cttatctaagctatctaataccaaaactggatgttgagtcagccacagtacatgctgggc 334
Query: 189 atgacagcatgcacctgtaatcctaaagccagggagagaggcaagaggacccctggggct 248
|| ||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct: 335 ataacagcatgcacctgtaatcctaaagacagggagagaggcaagacgatccctggggct 394
Query: 249 agctagacagccagaccagccaagtaagtgacctccagactcagtgagagactctgactc 308
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cgctagccagccagaccagccaagtaagtgacctccagactcagtgagagactctgactc 454
Query: 309 aaaaattaaagtggaaagcaaataaggaacccacccacagtcaacttctgtcttttacat 368
||||||||||||||||||||||||||||| ||| | ||||||||| |||| |||||||
Sbjct: 455 aaaaattaaagtggaaagcaaataaggaagccatttagagtcaacttttgtcctttacat 514
Query: 369 gcttaggcacatatgtgcaaatgcaca------------cagacacaggcacatgcacat 416
||||||||||| ||||||||||||||| |||||||||||||| |||||
Sbjct: 515 gcttaggcacacatgtgcaaatgcacatagacacagacacagacacaggcacacacacat 574
Query: 417 acaaacacacacacac------------------------------------------ca 434
||| |||||||||||| ||
Sbjct: 575 acacacacacacacacacacacacacacacacacacacacacatacatacacacactcca 634
Query: 435 agacaacttgatttttctgcattagttactaagaacctgactaatcatctccttaaatac 494
|||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 635 agacaacttgatttttatgcattagttactaagagcataactaatcatctccttaaatac 694
Query: 495 aaatagaattattttttattctataaattatca-ggaaaacactaattggaggggacagt 553
||||||||| ||||||| ||||||||| ||||| ||||| ||||||||| |||||||||
Sbjct: 695 aaatagaatgattttttgttctataaaatatcaaggaaa-cactaattgcaggggacagc 753
Query: 554 ttggccagaggg 565
||||||||||||
Sbjct: 754 ttggccagaggg 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
