Query= MSMg01no178_b05.b1 MSMg01no178_b05.b1 CHROMAT_FILE:
MSMg01no178_b05.b1 PHD_FILE: MSMg01no178_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:47 2005
(693 letters)
>mm_chr6_103230985_103232080
Length = 1096
Score = 1191 bits (616), Expect = 0.0
Identities = 671/693 (96%), Gaps = 9/693 (1%)
Strand = Plus / Minus
Query: 7 attctgggtcagtagtactctgccattgattcacacatcatgcttaagttgggctttgtc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 attctgggtcagtagtactctgccattgattcacacatcatgcttaagttgggctttgtc 837
Query: 67 aaattctgctcaagttcctccatgggtattcctgggattttcatcttgcttgttcctcct 126
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 836 aaattctgctcaagttcctccatgggtattcctgcgattttcatctcgcttgttcctcct 777
Query: 127 tgtatcttgcatggaatgctaaacacaaggtttactccctttgtccttaactattgtcga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tgtatcttgcatggaatgctaaacacaaggtttactccctttgtccttaactattgtcga 717
Query: 187 cctattgcaataacttctttcacaaacctatttttcctgatataattatctatcaaatgt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 cctattgcaataacttctttcacaaacctatttttcctgatataattatctatcaaatgt 657
Query: 247 caacataaatggctgtcttttctttcatcctttaggtaacagatgccatttctttctcta 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 caacataaatggctgtcttttctttcatcctttaggtaacagatgccatttctttctcta 597
Query: 307 agtataatttctttctgcagctaaacttttattaagaccaactctgctttctccttacaa 366
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||
Sbjct: 596 agtataatttctttctgcaggtaaacttttattaagaccaactctgttttctcctta-aa 538
Query: 367 gaagaatatgtctgttgaaaaaaagcatatagagttaaaaagtaaatttgtcattattta 426
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 537 --agaatatgtctgttgaaaaaaagcatgtagagttaaaaagtaaatctgtcattatttc 480
Query: 427 tgtgatttaaacttcaatatcttccaa-gagtcttaaattaagagaatattttgcctttg 485
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 479 tgtgatttaaacttcaatatcttccaaagagtcttaaattaaaagaatattttgcctttg 420
Query: 486 attatgaaaat-----cctttgcttgctagttaaaatatttgatattttctataataata 540
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 419 attatgaaaatgttttcctttgcttgttagttaaaatatttgatattttctataataata 360
Query: 541 agaagactttaagacagggctttatgtaaaattaaaacaataagctacataaaatgtttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agaagactttaagacagggctttatgtaaaattaaaacaataagctacataaaatgtttg 300
Query: 601 aataatatttttaaaattagtatcagataagtaaactattcatgcaattganaggaatct 660
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 299 aataatattttttaaattagtatcagataagtaaactattcatgcaattgagagggatct 240
Query: 661 agttaaaccatattaaaagagaatgattgatcc 693
|||||||| ||||||||||||||||||||||||
Sbjct: 239 agttaaactatattaaaagagaatgattgatcc 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1096
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1086
Effective search space: 741738
Effective search space used: 741738
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_b05.g1 MSMg01no178_b05.g1 CHROMAT_FILE:
MSMg01no178_b05.g1 PHD_FILE: MSMg01no178_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:47 2005
(653 letters)
>mm_chr6_103080599_103081651
Length = 1053
Score = 1185 bits (613), Expect = 0.0
Identities = 642/653 (98%), Gaps = 4/653 (0%)
Strand = Plus / Plus
Query: 1 tctgggacatctaagtgaagtaattggttttcaggttgttcccatctctgagaatgagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tctgggacatctaagtgaagtaattggttttcaggttgttcccatctctgagaatgagag 264
Query: 61 tttccaattcctttatgtccagaagtggaggctatcattcaaggatctgttcatggcaaa 120
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 265 tttccaattcctttatgtccaaaagtggaggctatcgttcaaggatctgttcatggcaaa 324
Query: 121 caaactaaatgataaaagcagtatttttccctccagagcacaaggcagctttcctatagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaactaaatgataaaagcagtatttttccctccagagcacaaggcagctttcctatagc 384
Query: 181 tttggaagataaagataatggctctcgggggaacaaaggttaggttttcttagctcatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttggaagataaagataatggctctcgggggaacaaaggttaggttttcttagctcatta 444
Query: 241 gaaaagatttgggctgttaaattcagatttcctctcgtactgtaacctacttcccaaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaaagatttgggctgttaaattcagatttcctctcgtactgtaacctacttcccaaaca 504
Query: 301 tgtgtcatctggcccacttatctttgctctctgggaattggagtgtggagaaggagcaca 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 505 tgtgtcatctggcccacttatctttgctctgtgggaattggagtgtggagaagcagcaca 564
Query: 361 agaatgttgatattctgggtttccatgtgagcaatgaactgccctttgtctctgactctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaatgttgatattctgggtttccatgtgagcaatgaactgccctttgtctctgactctt 624
Query: 421 ctcctatcttctgctggcatccaaaaagccaaaaagccaaaaagcctaaatgaataaata 480
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 625 ctcctatcttctgctggcatccaaaaagccaaaaagccaaaaagcc-aaa---ataaata 680
Query: 481 aataaataaaaccaaaagaatgtcttggagtatttttaactagcagatttctcccagtta 540
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 aaaaaataaaaccaaaagaatgtcttggagtatttttaactagcagatttttcccagtta 740
Query: 541 tttccaaatcaccaagaattttgcaaattttaatgaaatgaggtattaaaaaccaaatgt 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttccaaatcaccaaaaattttgcaaattttaatgaaatgaggtattaaaaaccaaatgt 800
Query: 601 ttatgcagaccatatttattcttccccaaggtcttgcaaactttatatgcccc 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttatgcagaccatatttattcttccccaaggtcttgcaaactttatatgcccc 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
