BAC Information

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BAC

Clone NameMSMg01-179G18
Chromosome6 (Build37)
Map Location 134,057,123 - 134,057,642
singlet/doubletsinglet
Overlap geneEtv6
Upstream gene2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063
Downstream geneLOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179G18.T7 (MSMg01no179_g18.b1)MSMg01-179G18.TJ (MSMg01no179_g18.g1)
ACCAG373211AG373212
length841750
length of high quality
(start - end)
219 (71 - 289)521 (77 - 597)
definitionCHROMAT_FILE: MSMg01no179_g18.b1 PHD_FILE: MSMg01no179_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:26 2005CHROMAT_FILE: MSMg01no179_g18.g1 PHD_FILE: MSMg01no179_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGG
AATTCCTCAGTATTTCCGGAGAATTTCACATGTACCTCATGACAGAAACC
TGCCAGGAGAGCCCCTGTCCTCTCAACATTTCACCAAACCACCACAAAAA
CAACACTCATCAATCAATGTGTGTATGTGTGTGTGTGTGTGTGTGTGCGC
ATGAGAGCGGGGGGAGGGGGAGGGAAACACTTCACCAACCACCACAGAAA
CACTCATCAGTGCGTGTGTGCATGGGGGGGGGTGTGGAAGTCCATTCTAA
AATCCATTCTGCTACTCTTTTTTTTTTTTATTTCCTCCTTAATCCTTTCT
CCTCTTTTCACTTATTTTTTCCCCTCCCTACTCCATCAATTACTTTCCTC
TTTTTGTTTGTGTATTTTTTCCCCCCCCCCATTCTATTTCTTTTTACACA
TATCCATTTCTCTACCGTTTACTCACTCGTACACTTATATTTTTTCTCTC
TACCTCCCCACTTTTACTTTTTTCCCCCCTTCACCCCTTACTCCTCTCTT
ATATCTCCTACTTTTCTCCTCCCTTCTTCTCTCTGCACCTTTTTTCCTTC
CCTTTTTTCTTCTCTTTCACCCAGTTTTTTTCTTCTTATCTAATTACCTT
TATTTCTTCACTTTCCCCCCCTTTTTTACTTCCTTTTCACATCTTTATAC
CATTTTTTTTTTCCTTTACATTTATTCTTCTTTCCTTCCCCTCTTTTTTT
GCTTCACCACCCTCCACCTTCTCCATTTATATTTATTTTATTTTCCTCTA
ACACTATCACAACCCCTCATAATTTCACTTCTCCCCCTCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTAGCGAACACACACACACCC
TCCAGGCATTGTCAGAGTCTCTGCACAAAGGCAACGCTGTCCCTCTTAGG
TTTCATTTTTTTAATAGGAAGGTTTGGTACAATATAGCCCTCTATGTCCA
CCCTCTGATGTTTGCATGTTAGGAAGGGGTCCATCCATTCTGGTTCTAGC
CAGGACCTTACCTGCTGCTCACCAGCCTGCCTACAGTGCAGTTTAAAGGC
AGGTAACTCAAATGCTTTCTCTACGGACAACGAAAATCGAGACCTTCTCT
TCCAGGACCCAATCCTCCGCCACTCCCTAGAGGAAGGAAAATGGATGCTC
CTTGTGTTCTGACCTTGCCCATCACTAGGCTCAGCCCATTCCTGTGGGGG
AAGCAGTGTTTCATACCCTACGTGACTTAGCTGGTATGTGCAGCGACGCT
TCAGTTAGTGCCGTGGCGCTCAAGCTCTGATGCCCGTCAGAGTCGCACCA
GTGGTGTCGTAGGGACGTTTGTGTGAGCCCTCGCCTTGAGGTTTTGTTTC
AGTAGCTGTGGGTTGTTAATCTGCGAAGTGTCTAGTTCTAGAGGCTTTAC
TTTAGAGCTGTGCGCTGCGACGTATTTGACCGAATGAACCCATATAGCAG
ACTGCCTGGCCTGACCCTGTTACTTGATGATCCCCGTCTGCTGTCACTTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_g18.g1 MSMg01no179_g18.g1 CHROMAT_FILE:
MSMg01no179_g18.g1 PHD_FILE: MSMg01no179_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:26 2005
         (521 letters)



>mm_chr6_134056923_134057842
          Length = 920

 Score =  922 bits (477), Expect = 0.0
 Identities = 510/521 (97%), Gaps = 1/521 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctagcgaacacacacacaccctccaggcattgtcagagtctctgcacaaaggcaacg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tctctagcgaacacagacacaccctccaggcattgtcagagtctctgcacaaaagcaacg 260

                                                                       
Query: 61  ctgtccctcttaggtttcatttttttaataggaaggtttggtacaatatagccctctatg 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ctgtccctcttaggtttcatttttttaataggtaggtttggtacaatatagccctctatg 320

                                                                       
Query: 121 tccaccctctgatgtttgcatgttaggaaggggtccatccattctggttctagccaggac 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tccaccctctgatgtttgcatgttaggaaggggtctatccattctggttctagccaggac 380

                                                                       
Query: 181 cttacctgctgctcaccagcctgcctacagtgcagtttaaaggcaggtaactcaaatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttacctgctgctcaccagcctgcctacagtgcagtttaaaggcaggtaactcaaatgct 440

                                                                       
Query: 241 ttctctacggacaacgaaaatcgagaccttctcttccaggacccaatcctccgccactcc 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 441 ttctctacggacaacgaaaatcgagaccttctcttccaggaccaaatcctccgtcactcc 500

                                                                       
Query: 301 ctagaggaaggaaaatggatgctccttgtgttctgaccttgcccatcactaggctcagcc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 ctagaggaaggaaaatggatgctccttgtgttctgaccttgcccatcactaggctcggcc 560

                                                                       
Query: 361 cattcctgtgggggaagcagtgtttcataccctacgtgacttagctggtatgtgcagcga 420
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 cattcctgtgggg-aagcagtgtttcataccctacgtgacttagctggtatgtggagcga 619

                                                                       
Query: 421 cgcttcagttagtgccgtggcgctcaagctctgatgcccgtcagagtcgcaccagtggtg 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 620 cgcttcagttagtgccgtggcgctcaagctctgttgcccgtcagagtcgcaccagtggtg 679

                                                    
Query: 481 tcgtagggacgtttgtgtgagccctcgccttgaggttttgt 521
           ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 680 tcgtacggacgtttgtgtgagccctcgccttgaggttttgt 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 920
Length adjustment: 10
Effective length of query: 511
Effective length of database: 910
Effective search space:   465010
Effective search space used:   465010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)