BAC Information

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BAC

Clone NameMSMg01-179J04
Chromosome6 (Build37)
Map Location 147,432,071 - 147,543,638
singlet/doubletdoublet
Overlap geneCcdc91
Upstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129
Downstream geneLOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179J04.T7 (MSMg01no179_j04.b1)MSMg01-179J04.TJ (MSMg01no179_j04.g1)
ACCAG373316AG373317
length721719
length of high quality
(start - end)
319 (41 - 359)604 (70 - 673)
definitionCHROMAT_FILE: MSMg01no179_j04.b1 PHD_FILE: MSMg01no179_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:37 2005CHROMAT_FILE: MSMg01no179_j04.g1 PHD_FILE: MSMg01no179_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,543,328 - 147,543,638)(147,432,071 - 147,432,674)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCCCATGTCATTACTAAAGCTTCTCATTAGTGCTTTAGAGGAGTTGTGG
TCCCGCCAGGGGAGGGGCACAGATTTTGTTAATTGCTTGAACCACTGAAC
TTTAGATTAGTGGCCTGCTGTGGCTAGAGAACACACATTTCCTTACTCTC
TCGAGCCACTGAGTTTGCCACCCTTTTCTGGAAGGTTCTGCTGCTGGGGC
AATCTGGACAGTCATTACAACTCTGTAGCTTAGTCTTTACTTTCTAAATT
GTAGCCAGGTAAGCTGGTTCATGGGCCCTTCTCAGGACGTGTGTGACCCT
CAAGAATGTAGGGCTTTTCACAGCCACTTATGGAAAATGAGTTTTTCCCT
CCCAGATCTTTCCTTTTAAGTTTTTACCAGCCTTTGCCCCAAAAGGTATT
CTGTGGCTGAGATGATAAGGATCACCATTTTCTGTCACTGGCAAACATCT
TAGACGTGGAGCTTTCCCTATGGGGTAGTGAGGATCTGGTAGGAGTTAGG
GACAGGAGCAGTGAAATGACCAAGATACATGGTATTCATGTATGAAATTC
TCAAAGAATTAATAAAAATACTACACTGAACAACAGAGACAAACAGCAGG
TTTTCCAAGAAGCTGCAGAGCCAGGAACAGAAATAGTTCACAGGCATATA
CAGCGTCTGTGAGGCTGCAAN
ATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTGATGTGGGTACATTAAACCAGTATTCTG
AAGTTTTTCAGTTTGGGGACTTACGAAGAACTATGATACTTCATCCCAAG
CATGGCCCCAAATGCAGTTTACAGAGCAGGTTGGAAATGCTGGACCTGCT
ATGGTCTGGTGGCCAAGTTGGAATCTGTAGGCTTAGGGAGACATAAAAGT
GAGTCTGTGTGCCATTTAAGGTTACTCCCCGAGGTTGGGAGTGGTAGAGC
ATACCAGTCATCCCAGTGTTGGGAAGATCAAAAGTTGAGCCATCCTAGTC
TATAGACAGAGTTAAAGGCCAGCCAGAGCTACATGAAATTCTGCCTTAAG
AAGAGCTGGGATACATCTTTAGAGGAGCCCTGATATCCCGAAAGAACTCT
GGATTCTGTACTTGGGTGGAAGACCTTACAGTGGGAATGGCAGCCACTGA
ATTGAGGAACCTTAACACAGCACTCAGTGTCTAAGGATGAGATGGGCGGA
GCTACCAGGATATGCAGCAGAACCAAACAGACCAGTCTGGCTTATGCAGA
CCCAGAGCTTATTGATTATGATATTCCCATCAGTGAAACAGAATTGATCT
TCATAAGCAGAAAGGTTAAGGTGAGATAAAATCTAATTCTGTTCAGTCAT
CCTAATAGAGATGGATGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_j04.b1 MSMg01no179_j04.b1 CHROMAT_FILE:
MSMg01no179_j04.b1 PHD_FILE: MSMg01no179_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:37 2005
         (319 letters)



>mm_chr6_147543328_147544046
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcccatgtcattactaaagcttctcattagtgctttagaggagttgtggtccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaattcctcccatgtcattactaaagcttctcattagtgctttagaggagttgtggtccc 252

                                                                       
Query: 65  gccaggggaggggcacagattttgttaattgcttgaaccactgaactttagattagtggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gccaggggaggggcacagattttgttaattgcttgaaccactgaactttagattagtggc 192

                                                                       
Query: 125 ctgctgtggctagagaacacacatttccttactctctcgagccactgagtttgccaccct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ctgctgtggctagagaacacacatttccttactctctcgagccactgagtttgccaccct 132

                                                                       
Query: 185 tttctggaaggttctgctgctggggcaatctggacagtcattacaactctgtagcttagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tttctggaaggttctgctgctggggcaatctggacagtcattacaactctgtagcttagt 72

                                                                       
Query: 245 ctttactttctaaattgtagccaggtaagctggttcatgggcccttctcaggacgtgtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  ctttactttctaaattgtagccaggtaagctggttcatgggcccttctcaggacgtgtgt 12

                      
Query: 305 gaccctcaaga 315
           |||||||||||
Sbjct: 11  gaccctcaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no179_j04.g1 MSMg01no179_j04.g1 CHROMAT_FILE:
MSMg01no179_j04.g1 PHD_FILE: MSMg01no179_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:37 2005
         (604 letters)



>mm_chr6_147431871_147432874
          Length = 1004

 Score = 1168 bits (604), Expect = 0.0
 Identities = 604/604 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgatgtgggtacattaaaccagtattctgaagtttttcagtttggggacttacgaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgatgtgggtacattaaaccagtattctgaagtttttcagtttggggacttacgaaga 260

                                                                       
Query: 61  actatgatacttcatcccaagcatggccccaaatgcagtttacagagcaggttggaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actatgatacttcatcccaagcatggccccaaatgcagtttacagagcaggttggaaatg 320

                                                                       
Query: 121 ctggacctgctatggtctggtggccaagttggaatctgtaggcttagggagacataaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggacctgctatggtctggtggccaagttggaatctgtaggcttagggagacataaaag 380

                                                                       
Query: 181 tgagtctgtgtgccatttaaggttactccccgaggttgggagtggtagagcataccagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtctgtgtgccatttaaggttactccccgaggttgggagtggtagagcataccagtc 440

                                                                       
Query: 241 atcccagtgttgggaagatcaaaagttgagccatcctagtctatagacagagttaaaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcccagtgttgggaagatcaaaagttgagccatcctagtctatagacagagttaaaggc 500

                                                                       
Query: 301 cagccagagctacatgaaattctgccttaagaagagctgggatacatctttagaggagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagccagagctacatgaaattctgccttaagaagagctgggatacatctttagaggagcc 560

                                                                       
Query: 361 ctgatatcccgaaagaactctggattctgtacttgggtggaagaccttacagtgggaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgatatcccgaaagaactctggattctgtacttgggtggaagaccttacagtgggaatg 620

                                                                       
Query: 421 gcagccactgaattgaggaaccttaacacagcactcagtgtctaaggatgagatgggcgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagccactgaattgaggaaccttaacacagcactcagtgtctaaggatgagatgggcgg 680

                                                                       
Query: 481 agctaccaggatatgcagcagaaccaaacagaccagtctggcttatgcagacccagagct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agctaccaggatatgcagcagaaccaaacagaccagtctggcttatgcagacccagagct 740

                                                                       
Query: 541 tattgattatgatattcccatcagtgaaacagaattgatcttcataagcagaaaggttaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tattgattatgatattcccatcagtgaaacagaattgatcttcataagcagaaaggttaa 800

               
Query: 601 ggtg 604
           ||||
Sbjct: 801 ggtg 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)