BAC Information

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BAC

Clone NameMSMg01-180G05
Chromosome6 (Build37)
Map Location 109,944,962 - 110,093,099
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180G05.T7 (MSMg01no180_g05.b1)MSMg01-180G05.TJ (MSMg01no180_g05.g1)
ACCAG373882AG373883
length725728
length of high quality
(start - end)		625 (40 - 664)568 (70 - 637)
definitionCHROMAT_FILE: MSMg01no180_g05.b1 PHD_FILE: MSMg01no180_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:37 2005CHROMAT_FILE: MSMg01no180_g05.g1 PHD_FILE: MSMg01no180_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,944,962 - 109,945,582)(110,092,532 - 110,093,099)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTATTTCTACCTGTTGGGACTTTCTGGTGGGAAGTTTAGGAATGGTGTTC
TTGTAGGTCAAATTAAATCAAAAATTCTTAATTGTTTATTATCCACCATA
CCTACTATAGCAGAGAGGTGGAAGTGACTCTACACAAATCACACAAGAAA
AACATCAAAGGTACTTCAAATTCCCAAATAGTCAATTTTTTCAAATGTGG
GGTCATTTTGGAAGAGAGAACCTCAATTGAGACAATGCATTGATCAGATT
GCCCTTTAGACATGTTTTAGGTCATCTCATATCTTTTGTTGCCATTGAGC
ACCTCTATTAGTTAATAAAAAGAGTAACAATGGGTTCTCTTCTAGGGTAT
CTAACCTCACCAACTGTGGGCTTTTATAAATGTAACTTATATTTGTCTGA
AGACAATAGTTATCCATGGGCCTGACTACCTCATTCATACAACATAGGCC
TAGTCCAGGAAGCTTCTAGACTCCACACAGTCTACTCCAGGCCTAAGATG
TTTTCAGCTTCTGAAATTTACTTCTGCATAAGCTCACTCTTTCTAGTTCT
TTCTAAGCTCTGTTTGTCTGGTCCATCAGCTGCTCTGGCCAAAACTCCTC
TTCAAGCTGACTGATTCAACCTGTCTTCTTTCTGGACCTCTGATTGAATT
GTTCTGCTTGGGCCCAATCTACTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACTAGAGCACGACCCTTCTTATATATGAGT
AATTCCTTGACTATCTGACCCCATCCTTTCCTACTGGTGCATTTATTTGG
ACTTCTGCAGATGCTCTTTTCCATATGGCCACATTTACTATAGTTCTTAA
TTTTGAATTTAATGGAGGTTTGGCTATTTACAAACCACAGATTTTACTTC
ATTATATTCTTTATTTCTGATTTTCATTTAGAGTCCATAGAGGTTATTTC
TTCCTGAAAGAAACTGAAGAATTTCTTTAAAAGATATTAACGCTCCCATG
GAAATTTTAGAAGGGAAATACAACTATGCATAGGGCTCAACAGTGAGGAA
ACCACTCCAGGGCCATATATAGGATCATAGTTTCTCAGAAAACTGCAGGG
CAAGATCAGGGACACAGGGTGGAGTTTTCTGAACTTATAACTTTCTAAGA
GGTTGGAACATTTTTAAAGATCTTATTTTATACACAGTTGGGCATATATC
CAACACCCAGTTGTACTTCCATCATCTTTCTCCCCAAACAGAACTTTTCC
TAGGGGTCCAAGGTGTTCCTTATGAGCATGATCAGGTAAAACCGGCTTCA
TCCATAGCCCTGGATCTAGGTCTTTCAGAAGAACCATGAATGCCACCCCA
GTAACACCTTTGTTGCCGATCTGCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_g05.b1 MSMg01no180_g05.b1 CHROMAT_FILE:
MSMg01no180_g05.b1 PHD_FILE: MSMg01no180_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:37 2005
         (625 letters)



>mm_chr6_109944758_109945782
          Length = 1025

 Score = 1123 bits (581), Expect = 0.0
 Identities = 611/621 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttatttctacctgttgggactttctggtgggaagtttaggaatggtgttcttg 64
           ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattctttatttctagttgttgggactttctggtgggaagtttaggaatggtgctcttg 264

                                                                       
Query: 65  taggtcaaattaaatcaaaaattcttaattgtttattatccaccatacctactatagcag 124
           | |||||||  |||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 ttggtcaaaggaaatgaaaaattcttaattgtttattatccaccatacctactatagcaa 324

                                                                       
Query: 125 agaggtggaagtgactctacacaaatcacacaagaaaaacatcaaaggtacttcaaattc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaggtggaagtgactctacacaaatcacacaagaaaaacatcaaaggtacttcaaattc 384

                                                                       
Query: 185 ccaaatagtcaattttttcaaatgtggggtcattttggaagagagaacctcaattgagac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaaatagtcaattttttcaaatgtggggtcattttggaagagagaacctcaattgagac 444

                                                                       
Query: 245 aatgcattgatcagattgccctttagacatgttttaggtcatctcatatcttttgttgcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatgcattgatcagattgccctttagacatgttttaggtcatctcatatcttttgttgcc 504

                                                                       
Query: 305 attgagcacctctattagttaataaaaagagtaacaatgggttctcttctagggtatcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attgagcacctctattagttaataaaaagagtaacaatgggttctcttctagggtatcta 564

                                                                       
Query: 365 acctcaccaactgtgggcttttataaatgtaacttatatttgtctgaagacaatagttat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acctcaccaactgtgggcttttataaatgtaacttatatttgtctgaagacaatagttat 624

                                                                       
Query: 425 ccatgggcctgactacctcattcatacaacataggcctagtccaggaagcttctagactc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccatgggcctgactacctcattcatacaacataggcctagtccaggaagcttctagactc 684

                                                                       
Query: 485 cacacagtctactccaggcctaagatgttttcagcttctgaaatttacttctgcataagc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cacacagtctactccaggcctaagatgttttcagcttctgaaatttacttctgcataagc 744

                                                                       
Query: 545 tcactctttctagttctttctaagctctgtttgtctggtccatcagctgctctggccaaa 604
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 745 tcactctttctagttctttctaagctctgtttgtctgttccatcagctgctctggccaaa 804

                                
Query: 605 actcctcttcaagctgactga 625
           | |||||||||||||||||||
Sbjct: 805 agtcctcttcaagctgactga 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no180_g05.g1 MSMg01no180_g05.g1 CHROMAT_FILE:
MSMg01no180_g05.g1 PHD_FILE: MSMg01no180_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:37 2005
         (568 letters)



>mm_chr6_110092332_110093299
          Length = 968

 Score = 1044 bits (540), Expect = 0.0
 Identities = 561/568 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactagagcacgacccttcttatatatgagtaattccttgactatctgaccccatccttt 60
           |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||
Sbjct: 768 aactagagcacgacccttcttatatatgagtaataccttgactatctgaaaccatccttt 709

                                                                       
Query: 61  cctactggtgcatttatttggacttctgcagatgctcttttccatatggccacatttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cctactggtgcatttatttggacttctgcagatgctcttttccatatggccacatttact 649

                                                                       
Query: 121 atagttcttaattttgaatttaatggaggtttggctatttacaaaccacagattttactt 180
           || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 648 attgttcttaattttgaatttaatagaggtttggctatttacaaaccacagattttactt 589

                                                                       
Query: 181 cattatattctttatttctgattttcatttagagtccatagaggttatttcttcctgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cattatattctttatttctgattttcatttagagtccatagaggttatttcttcctgaaa 529

                                                                       
Query: 241 gaaactgaagaatttctttaaaagatattaacgctcccatggaaattttagaagggaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaaactgaagaatttctttaaaagatattaacgctcccatggaaattttagaagggaaat 469

                                                                       
Query: 301 acaactatgcatagggctcaacagtgaggaaaccactccagggccatatataggatcata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 acaactatgcatagggctcaacagtgaggaaaccactccagggccatatataggatcata 409

                                                                       
Query: 361 gtttctcagaaaactgcagggcaagatcagggacacagggtggagttttctgaacttata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtttctcagaaaactgcagggcaagatcagggacacagggtggagttttctgaacttata 349

                                                                       
Query: 421 actttctaagaggttggaacatttttaaagatcttattttatacacagttgggcatatat 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 actttctaagagtttggaacatttttaaagatcttattttatacacagttgggcatatat 289

                                                                       
Query: 481 ccaacacccagttgtacttccatcatctttctccccaaacagaacttttcctaggggtcc 540
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 288 ccaacacccagttgtacttccatcatctttctccccaaagagaacttttcctaggggtcc 229

                                       
Query: 541 aaggtgttccttatgagcatgatcaggt 568
           ||||||||||||||||||||||||||||
Sbjct: 228 aaggtgttccttatgagcatgatcaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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