Query= MSMg01no180_i02.b1 MSMg01no180_i02.b1 CHROMAT_FILE:
MSMg01no180_i02.b1 PHD_FILE: MSMg01no180_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:45 2005
(567 letters)
>mm_chr6_86195152_86196118
Length = 967
Score = 1017 bits (526), Expect = 0.0
Identities = 553/564 (98%), Gaps = 5/564 (0%)
Strand = Plus / Plus
Query: 5 gaattctctaagaat-tacaaatgagaagctggcagtgtagctcagttggtagcgtgctt 63
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctctaagaaaatacaaatgagaagctggcagtgtagctcagttggtagcgtgctt 267
Query: 64 gcctagaatgtacagacccctgggttcaatccccagcactgtataaacaaggagtggagg 123
||||| |||| ||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 268 gcctacaatgcacagagccctgggttcaattcccagcactgtataaacaaggagtggagg 327
Query: 124 tgcatgcctgcaaccccagcactcaggaggtggaagcaatagggtcagaagctcaaggtc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgcatgcctgcaaccccagcactcaggaggtggaagcaatagggtcagaagctcaaggtc 387
Query: 184 acccagtgggtgccagatcaaggctccattaccttgggttgtgtgaaaacctgttgcaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acccagtgggtgccagatcaaggctccattaccttgggttgtgtgaaaacctgttgcaaa 447
Query: 244 aacatttattttattgtattatatttatttactacatattatatacattagatattagga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aacatttattttattgtattatatttatttactacatattatatacattagatattagga 507
Query: 304 gttgggaaatagggcatttgcctgacatttgtgaggctctgagttttatctccagtacca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gttgggaaatagggcatttgcctgacatttgtgaggctctgagttttatctccagtacca 567
Query: 364 gaaaggaaaaaaaaaaaaaaaagaatatttatatgactgaaaagcagcagggagggaggg 423
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gaaaggaaaaaaaaaaaa----gaatatttatatgactgaaaagcagcagggagggaggg 623
Query: 424 aagagaagagagaaaggaaagaataactagaccattaaagaacaaataatatagggaaac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagagaagagagaaaggaaagaataactagaccattaaagaacaaataatatagggaaac 683
Query: 484 agttataaaaattatagttttatgagcaacaaaagataccactacagaaaaaaaaataca 543
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 684 agttataaaaattatagttttatgagcaacaaaagaaaccactacagaaaaaaaaataca 743
Query: 544 tagtcaatatctccattcttgaac 567
||||||||||||||||||||||||
Sbjct: 744 tagtcaatatctccattcttgaac 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_i02.g1 MSMg01no180_i02.g1 CHROMAT_FILE:
MSMg01no180_i02.g1 PHD_FILE: MSMg01no180_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:46 2005
(552 letters)
>mm_chr6_86338465_86339416
Length = 952
Score = 1060 bits (548), Expect = 0.0
Identities = 551/552 (99%)
Strand = Plus / Minus
Query: 1 aatgacccatatcaacagctggtgacaactttcatcaaaggagaactcaattccactctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aatgacccatatcaacagctggtgacaactttcatcaaaggagaactcaattccactctc 693
Query: 61 ttcagctccagacccaaggatcagtttggcctctcggcaattcttgtcactgatgactcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttcagctccagacccaaggatcagtttggcctctcggcaattcttgtcactgatgactcc 633
Query: 121 gacatgtttattaacagtctgtccattgtggcctctgtaagacagaaggagggtccccca 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gatatgtttattaacagtctgtccattgtggcctctgtaagacagaaggagggtccccca 573
Query: 181 cccgcggtggatggcatgcacgtgtggaagaccttctccagggacatcctcaccaaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cccgcggtggatggcatgcacgtgtggaagaccttctccagggacatcctcaccaaagaa 513
Query: 241 caaatttcaaagctcttcctgtcctatgattatgctgtgcggaagccatggctgtcctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 caaatttcaaagctcttcctgtcctatgattatgctgtgcggaagccatggctgtcctat 453
Query: 301 cctcactatgagcctcctcagaaatgtccctccatcatcctccacgaccggctctattac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cctcactatgagcctcctcagaaatgtccctccatcatcctccacgaccggctctattac 393
Query: 361 ctcaatggcatcgagtttgcggccagctgcatggaaatgagcgccattgccggctacaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctcaatggcatcgagtttgcggccagctgcatggaaatgagcgccattgccggctacaac 333
Query: 421 gcagctctcctcgcctaccaccgctggaacggcaatgaggacatgattgatcaggacgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gcagctctcctcgcctaccaccgctggaacggcaatgaggacatgattgatcaggacgac 273
Query: 481 ctgtatgaaaggcttaagacggagctgtaactgagcactgcccctcccccgagcgtcctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctgtatgaaaggcttaagacggagctgtaactgagcactgcccctcccccgagcgtcctg 213
Query: 541 ctctcgaaggac 552
||||||||||||
Sbjct: 212 ctctcgaaggac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
