BAC Information

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BAC

Clone NameMSMg01-180M10
Chromosome6 (Build37)
Map Location 137,822,377 - 137,822,709
singlet/doubletsinglet
Overlap genenone
Upstream geneMgp, Erp27, Arhgdib, Pde6h, Rerg, Ptpro, Eps8, Strap, Dera
Downstream gene9830102E05Rik, Mgst1, Lmo3, Igbp1b, EG668196
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180M10.T7 (MSMg01no180_m10.b1)MSMg01-180M10.TJ (MSMg01no180_m10.g1)
ACCAG374159AG374160
length724724
length of high quality
(start - end)
613 (42 - 654)542 (72 - 613)
definitionCHROMAT_FILE: MSMg01no180_m10.b1 PHD_FILE: MSMg01no180_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:06 2005CHROMAT_FILE: MSMg01no180_m10.g1 PHD_FILE: MSMg01no180_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATTCGATGCGCAAACACACACATACACACACACACACACACACACACA
CACACACACACACACACACCCGTTAGTGTTTACCTGACACTAACCAGGGT
CATTTGGGCAGAAGGAATCTTAATCAAGAATTAAGGATTCTTAATTAAAT
TAGTTAATAAGATTAGCCAGTAGGCAAGTCTGTAGGGCATATTCTTGATT
GATGACTGATGTGGGCTCACTGTGGGTGGTGCCACCCCTGGACTGATAGT
CCTGGATGGTGTAAGAAAGCAGACTGGACAAGCCATGGACAAGCCAATAA
CAGCACTCCTCCATGGCCACTGCATCAGCTCCTGCCTCAGCCGAGTTCCC
GCTCAGCTGAATCCTGCCCTGACTTTCCTCAGTGATAAACTGTTACCTGG
AAGTATAAGTGAGATAAACCCCTTCCTCCACAAGTTGCTTTCCGTTGTTG
TGTTTATCACAGCAATGGAAATTGTAGCAGAGCGAGCCATCACAGAAGAA
GGAGCAAGAGTAAGAGAAAAACACAGAGAAACAATGTATTCTGGAAACAG
GGCTGCTGTACATGCAGACTCATAGCTGCCATGGCTGCCTGTAGGCTTAG
ATGTTTCAAAACCTACTTAATTAAGGGTTCTTAAATACTTCAACCTTTTC
TTCAGCCCTCCAACCCAAGGTAGA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTAGGTAGAGCAGGCTGGCCTCAACACA
TAGAGATCCACCTGTCTCTGCTTCCTGAGTGCTGGGATTACAGATATGAG
TTACCAGTCCTCCTGGCTTACTTTTAGTCGTGTGCTTGTGCTTGTCTGTA
TGTGGGTGTGTGCATATAAGTGCAGCTGCCCAGAGACCAGAAGAGGGTAT
TCAAACACCTGGAGCTGGAGTTATAAATAGTTGTGAGCAGCCTGGTGTGA
GAGCTAGGAACTGAATTCTGTCAGGAGCCATAATAGGACAAGCTATTAAC
TAGCAGGTGATCTTCCTGAGATGGTCTGCTTTGGATTAATCTGCTACAAA
TTTGCTCTTATAGGCAAGGGCCTAAGAGAATTCATTTTAGGAAAGATTCC
TGCTATTAATATGCTTTTCCTGTTATTATTAAACATATATAACAATCACT
AGGTATTAGCCCACCCATTTTGATCAGAGTCAGATCTATGAAGATGCACT
GTCTTGTAGTGATGCTATATAGGCAAATAGATAACTTAAGTCTTAATGAT
GATCCTAAAAGAATTCCTAAAATTAAGCTCTTTTATATTGGGACTGTTAC
TAGGCCTCTTTCTTTTCTTTCTTTCTTTTCTTTCTTTCTTTCTTCCTTTC
TTTCCTTCTTCCTTTCTTTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_m10.b1 MSMg01no180_m10.b1 CHROMAT_FILE:
MSMg01no180_m10.b1 PHD_FILE: MSMg01no180_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:06 2005
         (613 letters)



>mm_chr6_137821697_137822709
          Length = 1013

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Minus

                                                                        
Query: 281  gactggacaagccatggacaagccaataacagcactcctccatggccactgcatcagctc 340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 gactggacaagccatggacaagccaataacagcactcctccatggccactgcatcagctc 954

                                                                        
Query: 341  ctgcctcagccgagttcccgctcagctgaatcctgccctgactttcctcagtgataaact 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  ctgcctcagccgagttcccgctcagctgaatcctgccctgactttcctcagtgataaact 894

                                                                        
Query: 401  gttacctggaagtataagtgagataaaccccttcctccacaagttgctttccgttgttgt 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  gttacctggaagtataagtgagataaaccccttcctccacaagttgctttccgttgttgt 834

                                                                        
Query: 461  gtttatcacagcaatggaaattgtagcagagcgagccatcacagaagaaggagcaagagt 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833  gtttatcacagcaatggaaattgtagcagagcgagccatcacagaagaaggagcaagagt 774

                                                                        
Query: 521  aagagaaaaacacagagaaacaatgtattctggaaacagggctgctgtacatgcagactc 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773  aagagaaaaacacagagaaacaatgtattctggaaacagggctgctgtacatgcagactc 714

                                             
Query: 581  atagctgccatggctgcctgtaggcttagatgt 613
            |||||||||||||||||||||||||||||||||
Sbjct: 713  atagctgccatggctgcctgtaggcttagatgt 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)