BAC Information

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BAC

Clone NameMSMg01-180N08
Chromosome6 (Build37)
Map Location 147,879,039 - 147,879,546
singlet/doubletsinglet
Overlap genenone
Upstream genePpfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736
Downstream geneMlstd1, Ergic2, Tmtc1, 1110033J19Rik, EG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180N08.T7 (MSMg01no180_n08.b1)MSMg01-180N08.TJ (MSMg01no180_n08.g1)
ACCAG374197AG374198
length730736
length of high quality
(start - end)
368 (37 - 404)550 (68 - 617)
definitionCHROMAT_FILE: MSMg01no180_n08.b1 PHD_FILE: MSMg01no180_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:10 2005CHROMAT_FILE: MSMg01no180_n08.g1 PHD_FILE: MSMg01no180_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATA
AAGTCCTTAATTCATCTGAACAGCATTAATTTGTGAAAGTTCACTTTCAT
GTTGATCCATGCCAAATTTACCTAATAGGGTAGGCTATCAATCACACCAG
GCTTTAGGCAGTGAGAGTCTCCTGTTGTCAACTCACATCAAGTCAAGTGA
ACAAGGAGTATGGCAATGACAACCATGAGAAAGCACATCAATAGTAAGAG
GCAATCCTGGGATGTAGTCTCTGGGGCGGTGCCTCACCAGAGCTCACCCA
TCAGAGCTGAGCAGGATCGTGGGCCATCTCCAGGGAGATCATCTGTCCAC
TACAGCTCTTCCTGCATGTCATCCGCCACTTGGCCTCCAACTAATTCTGA
CCACGCGCCCTAATCGTCTGGCTCCTTCTTTTTCTCTGGCTTCAGCTGCC
TCTGCTGACCTGTACTGACTGCATGAACTCATGAACAGACTCAACTCCAC
TGCACTGCACTCACTGAACTGACTCCCAACTGACTGACCCTCTCTCCCTG
TGCTGTTCTTGAGTAGACTCTCCTATCTCTGACTCATTTTGTCACTTTGT
CTGTCCCTCCACTACACATCATTATTTGGCATTGGAAGTGTGTAACAAGA
GAATGTCTGCATTCCAGCTAGCCCACACATTTTTTTGAATGTGATCCCTT
GTCATTATAATTCTTTTGTTGAATGGACAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATATAAAAGAAACAACAGATCCCTTGGGAATC
AATTATGTGTCATACGCAATGACACATAACATTTCAAATTTATTAAGAAT
GCTGTCTTTGATAGTTGTCTGTTTCACTAAGATTTGTACTTTTAACATAA
AGTAATTTCAGTTTTAGAGTTAAACTTTTAACTAAATTTACCATATACAT
TCACAAAATTTTGACTTGCAGCAAAGTGAGTTTGCAAGTAAAGTGAGTCT
AAATGAACAACTGCAATGTTATGGAATTTCGAGGTCTTCCTCCGAGCAAC
CAGTGAAGGGAGTCAGAAATGGGGTCACATGCCAGAGAGTAACTAAGCTA
AAAGCACCCCACGGCCTCTTCACACTAGAGATTTGTCAAGTCACTAAGAC
AATGAGCAGCTCACAGTTGCTTCACACCAGAGTCACTAAGCCAATGAGCA
GTTTGCAACTGTGGACAAGGAAATGTCTATCAGCATATCAGCAGTATTCA
TTTAGACTCATCATTTGATTCAGATGAAAATCACACCCCATAGACGAACA
CACAGATTCATCCTGCACAGCCTGTTGTGACAGCTTGCATCCCCAGGAAT
AGCCTTCTTGACTGAAATGAGTTTGATCTTCAGCAGACTGGGGTTCAATG
ACCTTTCCTGTGTATTGCCGGAAGTTAATCTATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_n08.g1 MSMg01no180_n08.g1 CHROMAT_FILE:
MSMg01no180_n08.g1 PHD_FILE: MSMg01no180_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:10 2005
         (550 letters)



>mm_chr6_147878955_147879904
          Length = 950

 Score =  843 bits (436), Expect = 0.0
 Identities = 501/550 (91%), Gaps = 42/550 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatataaaagaaacaacagatcccttgggaatcaattatgtgtcatacgcaatgacacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 592 aatataaaagaaacaacagatcccttgggaatcaattatgtgtcataagcaatgacacat 533

                                                                       
Query: 61  aacatttcaaatttattaagaatgctgtctttgatagttgtctgtttcactaagatttgt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 532 aacatttcaaatttattaagaatgctgactttgatagttgtctgtttcactaagatttgt 473

                                                                       
Query: 121 acttttaacataaagtaatttcagttttagagttaaacttttaactaaatttaccatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 acttttaacataaagtaatttcagttttagagttaaacttttaactaaatttaccatata 413

                                                                       
Query: 181 cattcacaaaattttgacttgcagcaaagtgagtttgcaagtaaagtgagtctaaatgaa 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cgttcacaaaattttgacttgcagcaaagtgagtttgcaagtaaagtgagtctaaatgaa 353

                                                                       
Query: 241 caactgcaatgttatggaatttcgaggtcttcctccgagcaaccagtgaagggagtcaga 300
           ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 352 caactgcaatgctatggaatttcgaggtcttcctccgagcaaccagggaagggagtcaga 293

                                                                       
Query: 301 aatggggtcacatgccagagagtaactaagctaaaagcaccccacggcctcttcacacta 360
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 292 aatggggtcacatgccagagagtaactaagctaaaagcagtccacggcctcttcacacta 233

                                                                       
Query: 361 gagatttgtcaagtcactaagacaatgagcagctcacagttgcttcacaccagagtcact 420
           ||||||||||||||||||||||                                      
Sbjct: 232 gagatttgtcaagtcactaaga-------------------------------------- 211

                                                                       
Query: 421 aagccaatgagcagtttgcaactgtggacaaggaaatgtctatcagcatatcagcagtat 480
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ----caatgagcagtttgcaactgtggacaaggaaatgtctatcagcatatcagcagtat 155

                                                                       
Query: 481 tcatttagactcatcatttgattcagatgaaaatcacaccccatagacgaacacacagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tcatttagactcatcatttgattcagatgaaaatcacaccccatagacgaacacacagat 95

                     
Query: 541 tcatcctgca 550
           ||||||||||
Sbjct: 94  tcatcctgca 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)