BAC Information

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BAC

Clone NameMSMg01-181A01
Chromosome6 (Build37)
Map Location 112,629,660 - 112,795,093
singlet/doubletdoublet
Overlap geneRad18, Srgap3
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077
Downstream geneEG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181A01.T7 (MSMg01no181_a01.b1)MSMg01-181A01.TJ (MSMg01no181_a01.g1)
ACCAG374315AG374316
length714755
length of high quality
(start - end)
618 (43 - 660)303 (76 - 378)
definitionCHROMAT_FILE: MSMg01no181_a01.b1 PHD_FILE: MSMg01no181_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:22 2005CHROMAT_FILE: MSMg01no181_a01.g1 PHD_FILE: MSMg01no181_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,629,660 - 112,630,270)(112,794,794 - 112,795,093)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAAGAGGATCCGCGG
AATTCTAAGTTACCAGTTTCTCTAAATCATAATGTATCAGAGAGCAAGCG
CTAATCTGCTCCTGAAATATGGCAGAGTGTGAGCTGAAGAAGGAAAACAA
GAGGATGGAGAGGTAACCAGCACTAAAGGGAAAATCAAACACGGAAGGAA
ACAGAAGTTCTAGTCACCAGGACAACGGGAGCCCTGGTTTTGATTGACAT
CTATCAGGCAGAGAAGCATCGTGCAAAGGCAGGTCAGAGGCTGTGCTCAC
CTTCGCAGGCTCTCCTTCTTCTCTTCACGTGATAAACAACTGTCTAAATG
CTTATTGATATGATTTTCTGGAATGCTGACCCCACAAACGGGACAAGACA
CTGCATTTTAAAGAGAGGGGGGAGACATTATTAGCCATAGAACAGGCAAA
AATTACACTGACATCTTTCAGTAATTTAAAGACAGAATCCCAGCTGATAT
GCTCTTTAAAAGAGCCAGGAGAACAGGCAAACGGGTTACTAGTAACTAGC
TGCTTTGCGGGAAGTCCCATGATCAGAACCCTGGGCCTAGAGACTGCACT
TAGGTTTGGGAGTTAGCCAGCTGGAAACAGGGTACTAGGAAACCACAGTG
CTGAGTCTCCCCAGGTCGTAGGACATCTCACACAGGACAAACGCGACCTC
AGCAACTCTGTAAA
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCGTATGTGTGTAAAGGACAAATGGA
TTTATGTTGGGGTGTTAAGTGCGTACCCCGAGTGCCACTGGGAATGACTG
GGTTCCAGCCTGAGACTTCTAATTCACTAGAGCATTGGGAGAAATGTCTG
GAGGAGAGGAGCCATACACATTTCTTTGTTGATTGATCTTGGGTGACAAT
TGCAGTTGCTGAGCAGGCAAACATACTTTACACTCTTTGAAGGCGCCATG
CTTTTGGTTTGTTTAGAGACGAGCTCTCAGGTGGCTTGCACTGGCCTCAA
ATTTGTTATGTAGTTGAGGTTGATGCTGAACTCCTGATCCCCGGTTGTCC
TCTTATATCCCTGCCCCTACAGGTATGTTCTTGTCTCGCTTGCCTTCTCT
GCCTTTGCTACCCCTTTTGAACTATCCTGATCTTCATCCCCCCCATGTAG
TTTTCCCTCCTTCCCTATTCCTTTCCCTTCATCTGACTCTCCGCTTTTCT
CTCTTTTTTTTTTTCTTCTCTTTCTTTCTTTGCCACTTTTTTCTTTCCAT
ATGTCCTATCCCTTTTTTTTCCCTTTTCTCTTTTCTATTCTTCTCTTTAT
TCTCCAATCTTTCCCTATTACCTTCTTTCCCTCTTCTCATTCCATTCACT
ATATCTTTCCTTCTCATCTCCTCTTTTATATACTTATTTACTAATTATTT
TTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_a01.b1 MSMg01no181_a01.b1 CHROMAT_FILE:
MSMg01no181_a01.b1 PHD_FILE: MSMg01no181_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:22 2005
         (618 letters)



>mm_chr6_112629453_112630470
          Length = 1018

 Score = 1127 bits (583), Expect = 0.0
 Identities = 604/611 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctaagttaccagtttctctaaatcataatgtatcagagagcaagcgctaatctgc 67
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctaagtcactagtttctctaaatcataatgtatcagagagcaagcgctaatctgc 267

                                                                       
Query: 68  tcctgaaatatggcagagtgtgagctgaagaaggaaaacaagaggatggagaggtaacca 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tcctgaaatatggcagagtgtgagctgaagaaggaaaacaagaggatggagaggtaacca 327

                                                                       
Query: 128 gcactaaagggaaaatcaaacacggaaggaaacagaagttctagtcaccaggacaacggg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gcactaaagggaaaatcaaacacggaaggaaacagaagttctagtcaccaggacaacggg 387

                                                                       
Query: 188 agccctggttttgattgacatctatcaggcagagaagcatcgtgcaaaggcaggtcagag 247
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agtcctggttttgattgacatctatcaggcagagaagcatcgtgcaaaggcaggtcagag 447

                                                                       
Query: 248 gctgtgctcaccttcgcaggctctccttcttctcttcacgtgataaacaactgtctaaat 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gctgtgctcaccttcgcaggctctccttcttctcttcacgtgataaacaactgtctaaat 507

                                                                       
Query: 308 gcttattgatatgattttctggaatgctgaccccacaaacgggacaagacactgcatttt 367
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 508 gcttattgatatgattttctggaatgctgaccccacaaacaggacaagacactgcattta 567

                                                                       
Query: 368 aaagagaggggggagacattattagccatagaacaggcaaaaattacactgacatctttc 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaagagaggggggagacattattagccatagaacaggcaaaaattacactgacatctttc 627

                                                                       
Query: 428 agtaatttaaagacagaatcccagctgatatgctctttaaaagagccaggagaacaggca 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 agtaatttaaagacagaatcccagctgatatgctctttaaaagagccaggagaacaggca 687

                                                                       
Query: 488 aacgggttactagtaactagctgctttgcgggaagtcccatgatcagaaccctgggccta 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aacgggttactagtaactagctgctttgcgggaagtcccatgatcagaaccctgggccta 747

                                                                       
Query: 548 gagactgcacttaggtttgggagttagccagctggaaacagggtactaggaaaccacagt 607
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 748 gaggctgcacttaggtttgggagttagccagctggaaacagggtactaggaaaccacagc 807

                      
Query: 608 gctgagtctcc 618
           |||||||||||
Sbjct: 808 gctgagtctcc 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no181_a01.g1 MSMg01no181_a01.g1 CHROMAT_FILE:
MSMg01no181_a01.g1 PHD_FILE: MSMg01no181_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:22 2005
         (303 letters)



>mm_chr6_112794594_112795296
          Length = 703

 Score =  526 bits (272), Expect = e-154
 Identities = 293/300 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtatgtgtgtaaaggacaaatggatttatgttggggtgttaagtgcgtaccccgagtgc 60
           |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 500 cgtatgtgtgtaaaggacaaatggatttatgttgggatgttacgtgcgtaccccgagtgc 441

                                                                       
Query: 61  cactgggaatgactgggttccagcctgagacttctaattcactagagcattgggagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cactgggaatgactgggttccagcctgagacttctaattcactagagcattgggagaaat 381

                                                                       
Query: 121 gtctggaggagaggagccatacacatttctttgttgattgatcttgggtgacaattgcag 180
           ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||
Sbjct: 380 gtctggaggagaggagccatacacatttcttcgttgattgagcttggctgacaattgcag 321

                                                                       
Query: 181 ttgctgagcaggcaaacatactttacactctttgaaggcgccatgcttttggtttgttta 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgctgagcaggcaaacatactttatactctttgaaggcgccatgcttttggtttgttta 261

                                                                       
Query: 241 gagacgagctctcaggtggcttgcactggcctcaaatttgttatgtagttgaggttgatg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gagacgaggtctcaggtggcttgcactggcctcaaatttgttatgtagttgaggttgatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)