BAC Information

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BAC

Clone NameMSMg01-181H21
Chromosome6 (Build37)
Map Location 17,979,850 - 17,980,482
singlet/doubletsinglet
Overlap geneWnt2
Upstream geneTes, EG232599, Cav2, Cav1, Met, Capza2, St7
Downstream geneAsz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181H21.T7 (MSMg01no181_h21.b1)MSMg01-181H21.TJ (MSMg01no181_h21.g1)
ACCAG374654AG374655
length717835
length of high quality
(start - end)		650 (48 - 697)119 (122 - 240)
definitionCHROMAT_FILE: MSMg01no181_h21.b1 PHD_FILE: MSMg01no181_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:58 2005CHROMAT_FILE: MSMg01no181_h21.g1 PHD_FILE: MSMg01no181_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACACACATTCCCACACACACACACACACACACACACTGCTAGA
AGTTACAGCTCAGGCTAGCACATTTCTCAGTGGAATAAGGTATTGGCTGC
TTTTGCTGTCACTCAGCTGGCTCCAAACAAGCGAACATTAAATCCCTCAT
TTGTGGGGCATGTGAATTGTTTTGGAGTTGTCAAAGCTAAAATGGGTTTT
TGAGAAAAGCAAAGGGGTTCAGCTTAGGATGCTGTGATAAGACATGGTTG
TTTCAGAATCCACAACTGCCGGGACTGGGAATCAGCCAGGGAGGGTCTCT
ACGACCAGTAGGGTCCCCACTCCCATCTCCAAAAATCCATCAGCACCGCG
CCCATATGCGGGGACTTACCACCATGAAGAGCTGACCTCAGGGGTGAGCC
AGGTCAAGAGCAGAGGGAGCCAGAGCCAGATTCCACCGAGAGGGACGTTC
ATATTAACCCCCTTGCGTCTACATCAGGTCAGACTCCGTGTGCGGGCGCC
ATGCGTGCCCGGAGCAGAAGCGCTCAGCTCCGGGAGCGCCTCGTCACGGC
TGCCGGCGCCTCTGCGCCCCCGCCCCCCCGCCGCTCGCGTCTGCGGTTAG
TGGTGAGACTCACTGATAAAGTTTCAAAAGACGAGCCCAGCGAGCGATAA
AGGGCAGCCCGGGCCGN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCCGAAAACTGAGGGGAAAAAATGGCATTGTGATATTATATT
GTATAGAAATGAATAAGCCCTTGTTGGCAGTGAGAGGACACGAGCATTTC
TAAAATCTAAAGACAACAAGCAACAGCTACAAGAAAAAAATAGAAAAGGA
AATAGGAAAGGGAAGGGAAGAGGAGGGAAGGGGGGAGGTAAAAGCCTCTT
TTTTTTTTCCCTCACAACCACCACACACCAAATGTTTTTTAATTATATCC
ACAAAACACAACCATTTTAATACTTTTCAACACACAACAAAAAAAACANA
GTAATTTTTTTTTTTTCCCCCCCCCCCCCCCTTAAATTATTTTATTTTTA
ATTCACTTTTTTTTCACCTTCCCCCCATAAAAAAAAAAAAATTTATATTT
TTTCTTCCCCCCTTTTTTTTCTCCCCCACTTTTTTTCTCCTCCCCTTTTT
TTTTTTCCCCCCCTTTTTTTTTTGCACCATTAATTTTTCACTTTTTTTTT
CCCCCCCCCTTTTTTTTTTTTTTTTTCCCACCCCTTATATACACCTTTTT
TTCACCTATTTTTACCACCCCCCACCCTTTTTTTTTTTTTCTACCCCTCC
CCCCACCCCCTCCCTTTATCCTCCTTTATTTTACTATACATACTCTCTTC
TCTCATTCTTTACCACTATTATTTTTTTTAGATTCCCATATTTTTTTTTT
TTATTTCTCACCAATTTTTTAAACCAAACTATCACTTTACCCCACATAAT
TTTATTTTTTTCTTATTATCTCCCTCCCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_h21.b1 MSMg01no181_h21.b1 CHROMAT_FILE:
MSMg01no181_h21.b1 PHD_FILE: MSMg01no181_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:58 2005
         (650 letters)



>mm_chr6_17979633_17980682
          Length = 1050

 Score = 1185 bits (613), Expect = 0.0
 Identities = 631/641 (98%), Gaps = 8/641 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  cacacacattcccacacacacacacacacacacacactgctagaagttacagctcaggct 69
           ||||||||    |||||||||||||||||||||    |||||||||||||||||||||||
Sbjct: 218 cacacaca----cacacacacacacacacacac----tgctagaagttacagctcaggct 269

                                                                       
Query: 70  agcacatttctcagtggaataaggtattggctgcttttgctgtcactcagctggctccaa 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agcacatttctcagtggaataaggtattggctgcttttgctgtcactcagctggctccaa 329

                                                                       
Query: 130 acaagcgaacattaaatccctcatttgtggggcatgtgaattgttttggagttgtcaaag 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 acaagcgaacattaaatccctcatttgtggggcatgtgaattgttttggagttgtcaaag 389

                                                                       
Query: 190 ctaaaatgggtttttgagaaaagcaaaggggttcagcttaggatgctgtgataagacatg 249
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 390 ctaaaatgggtttttgagaaaagcaaaggggttcagcttaggatgctgtgctaagacatg 449

                                                                       
Query: 250 gttgtttcagaatccacaactgccgggactgggaatcagccagggagggtctctacgacc 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gttgtttcagaatccacaactgccgggactgggaatcagccagggagggtctctacgacc 509

                                                                       
Query: 310 agtagggtccccactcccatctccaaaaatccatcagcaccgcgcccatatgcggggact 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agtagggtccccactcccatctccaaaaatccatcagcaccgcgcccatatgcggggact 569

                                                                       
Query: 370 taccaccatgaagagctgacctcaggggtgagccaggtcaagagcagagggagccagagc 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 taccaccatgaagagctgacctcaggggtgagccaggtcaagagcagagggagccagagc 629

                                                                       
Query: 430 cagattccaccgagagggacgttcatattaacccccttgcgtctacatcaggtcagactc 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 cagattccaccgagagggacgttcatattaacccccttgcgtctacatcaggtcagactc 689

                                                                       
Query: 490 cgtgtgcgggcgccatgcgtgcccggagcagaagcgctcagctccgggagcgcctcgtca 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cgtgtgcgggcgccatgcgtgcccggagcagaagcgctcagctccgggagcgcctcgtca 749

                                                                       
Query: 550 cggctgccggcgcctctgcgcccccgcccccccgccgctcgcgtctgcggttagtggtga 609
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 750 cggctgccggcgcctctgcgcccccgcccccccgccgctcgcgtctgcggctagtggtga 809

                                                    
Query: 610 gactcactgataaagtttcaaaagacgagcccagcgagcga 650
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gactcactgataaagtttcaaaagacgagcccagcgagcga 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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