BAC Information

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BAC

Clone NameMSMg01-182H06
Chromosome6 (Build37)
Map Location 44,971,998 - 44,972,249
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040210
Downstream geneCntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182H06.T7 (MSMg01no182_h06.b1)MSMg01-182H06.TJ (MSMg01no182_h06.g1)
ACCAG375331AG375332
length758934
length of high quality
(start - end)
252 (77 - 328)62 (37 - 98)
definitionCHROMAT_FILE: MSMg01no182_h06.b1 PHD_FILE: MSMg01no182_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:12 2005CHROMAT_FILE: MSMg01no182_h06.g1 PHD_FILE: MSMg01no182_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTAAGTTACCTGAAAGTGAAGC
ATGATTTATAGTAACTGAATGAACAATATAAGATTAGGCTACCAGGATGT
ATGACAAGTATGTGGGTGCCAAAGGAAGGAAGAAGGACCATATGGGGACT
GTAAAGGAGACTCTGAAAGCTTCACGTTTCTTCTCCACTCTTACTGCCCT
GGTTTTCCCCTTCTTCCTCTGGACAAAACAGTACATCCCTAAGCTGATTC
CTGGTGACCTCATGATGTGCTGATCCACAAACTTCTTGGAGACAGTTGCA
GAGACCCACAATTAAACATTAGGCAGAGTTCACGGAATCATGGTTAATAG
GGTGAGAAAAGATTGTCCCCCCCACATGTTTTCTTGACAATGTGATGCCG
GATGCACTGAATCTCTCTTTTCCCGTTCCTCGATTGCTATTACAATATCT
TGCCCTTTCCTCACTTTTCCTTTTTTTTATTTTCTCTAGCCCCCCCTCTC
CTTTTCTTTTTTTCCTCCCTTCCCCCCTTCCCTTTCTATTTCCCCCCCCT
TTCCTCACTTTCTTTCCATTCTCCTTTTCGTCCTCTTTTCTTTTTCTTCT
TCCTCCTCTCCCGTTTTTTACCCTTTCTTTCCCTCTCCCCCCTTTTTTTT
TTTTCCACTTTCTCCTCCCTTCTTTTTTTTTTTTTCCCCCTTCCTCCACC
TCTCTACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCGGAATTCCT
ATCTTTTGTTGTTGTTTGTTTGTTTGTTTTGTTTTGTTTTTGGAAATCAT
AGGAAGTTGTCCACCCCCGCCCGCTAAACAGAATGAACCCCCCTTACAAT
CTTTTACGCCTTTTATGGAGGCCATTATGCGTCTTATATTGCTCATAGCC
ATCGCACAACGAACCATACGAAGTGGCAATCAAGAAATATTCTACCAGTA
ACGGTCTAGATCCTAATTTATAATGATGAGATGATACCACGACCAAGCAA
CAAAATCGGATTGCATATGATCTTAGCACTGAATTATATTTTTTTTGAAT
AATTAGATGATCATCTAAAACTACATGTTATAACATTTAGTATTTTTTTT
TATTTCCCCCCCCCACCCCCCCACGCGTAAGGAGGGGTGATAATTTTGGA
TTGCTGTATCGTATTGCTCCCCCCCCACCCATATAAATTTAAACCCTTCT
CTTTTTTTAGCGCCGTGGTTATAGATATCCTCCCGCCCGCTTTAACACAT
AATAGTAACACCCGCCATTATGATTCAAATCACCCACGATCACGTCCGAT
TCATATTATATAATTACTACTTACGGCTACTTAAAACAATCGCTTATAAA
TAAAAATTTTCGGACCCACCGTTAATAATATAATTCGCCCATTTATAATC
TCTTCTCGACTATAAAGTATTTCCATCCACCTACTTAATATATATTCTCC
ACCCACTTCATCTGCACCGCCTCCTTTCTGACTGCACTCGCCTTTATTTA
ATTTGTTACTACTTCCGTCACCTTATTATGATTTCAGTTAACTATGGTCT
TCGTTCATGACACGTTAAATTCGTAGTAGGTGACAAAAAAAAATCACACA
AGAAATTACAACATTTATAACTTATCACACACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_h06.b1 MSMg01no182_h06.b1 CHROMAT_FILE:
MSMg01no182_h06.b1 PHD_FILE: MSMg01no182_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:12 2005
         (252 letters)



>mm_chr6_44971798_44972449
          Length = 652

 Score =  456 bits (236), Expect = e-133
 Identities = 248/252 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttaagttacctgaaagtgaagcatgatttatagtaactgaatgaacaatataagatta 60
           |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 acttaagttacccgaaagtgaagcatgatttatagtaactgaatgaaaaatataagatta 260

                                                                       
Query: 61  ggctaccaggatgtatgacaagtatgtgggtgccaaaggaaggaagaaggaccatatggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctaccaggatgtatgacaagtatgtgggtgccaaaggaaggaagaaggaccatatggg 320

                                                                       
Query: 121 gactgtaaaggagactctgaaagcttcacgtttcttctccactcttactgccctggtttt 180
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gactgtaaaggagaccctgaaagcttcatgtttcttctccactcttactgccctggtttt 380

                                                                       
Query: 181 ccccttcttcctctggacaaaacagtacatccctaagctgattcctggtgacctcatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccttcttcctctggacaaaacagtacatccctaagctgattcctggtgacctcatgat 440

                       
Query: 241 gtgctgatccac 252
           ||||||||||||
Sbjct: 441 gtgctgatccac 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)