NNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTTGCCGATCTCCCTGTTTTGACTCACCACCACAGTGCT
ACAGTTACAACTGTGACTGGTAGTTACATGGCCCTGGGGATCTGAAGTCA
TATCTTCATGCTTGTGTGGAAGGTGCTCATCTTCTAAGCCATTTTCTCAG
CCCTCAAGTATTTTAATTATAATCCCACTTAAATGCAAAATATTTACATT
CAAGCAAAATTTTAAACTATTTCATGCATGTGAAGCCAGTCACAAGCCAA
ATAGGATATAAACTGCTAAAAGTAGGACCACTATATTTTGTGCTATTTTT
TATTGGCCATTCAGGATGGAACTGTAAGTCCGTGGTGGTACACTGTGGAT
AGTACTTCCTTACCAAAAGTGCTCATATATAATAGGAAAAGGTATACACT
CTCAAGTGAAAATCTAGAAAATTTACAAAAAAAAAATCACTGACCTTGGC
ACAAAGAGCGACATCAGGCATCATTCCAGGGACTTTGACGTATGATGCTC
ATTTCATTAATGTGAAAATCGGCTCTCAGAAAGATGAATGGCCTTTCCAA
AGCCAAATACCACTTTAACAAAGACAGAACAAGAATTACGGATTTAGATG
ATTTGAACTTGTGCTCTATTCTCTAACCACCATGGCCTTCTA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATGACAACCAGGGCTAAACAGAGAATCCCT
GCCTCGAAGACCCTTGCACAACACACAACTACAGAGAAAATGAATGACAC
GCAGGCATACAGAAGAGGACTGGTCCCAAAGACAGCTCTGTCCTAGATAT
ACTAGAGCACGTTGCTTCACAAAATGAATTCTGAACATGCTCTCACATAA
TGCATATGAATATACTTTCTAGGCTAGCCCCATATGATCACAAGAAACGA
AAGGCAAAAAGAAGATCAGAGTCAGAAGTATATCTCACACTCATGTCTCA
GACAGACTGGAAGGCACACCAGGCTTCGATTTTCAGAGGTCAATAGAGTG
GGGCTCCACCTACTAAATACTGCGGATCCTTCATATATAGACTTCCTTAT
GCTGCGAGATGCCCCAGACGGATAAATATTTTTTGCTGCTTCACAACTGA
ACTGTACTACTGATATGAATTGAACCGTACGTTTCTGAGATACCGACAGT
CTTACACAACTCCTGGGACAATTGACACAAGGACTAGCAACCTACAGGTT
GCCAACCACAGTGCCAGCAACTAGGATAACTAGCCAGCCCCTTGATTTAT
ACTATGGAGCCTTCCGGAACTGTGGGAGAAAAGATGTGCTCTATTTTAGT
GGTCTAAGCATGTCAAGC

Query= MSMg01no182_o08.b1 MSMg01no182_o08.b1 CHROMAT_FILE:
MSMg01no182_o08.b1 PHD_FILE: MSMg01no182_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:46 2005
         (565 letters)



>mm_chr6_16742119_16743081
          Length = 963

 Score =  978 bits (506), Expect = 0.0
 Identities = 548/562 (97%), Gaps = 2/562 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcttgccgatctccctgttttgactcaccaccacagtgctacagttacaactg 63
           ||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 913 ggaattctcttggggatctccctgttttgactcaccaccacagtgctgcagttacaactg 854

                                                                       
Query: 64  tgactggtagttacatggccctggggatctgaagtcatatcttcatgcttgtgtggaagg 123
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 853 tgactggtagttacatggccctggggatctgaactcatatcttcatgcttgtgtggaagg 794

                                                                       
Query: 124 tgctcatcttctaagccattttctcagccctcaagtattttaattataatcccacttaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tgctcatcttctaagccattttctcagccctcaagtattttaattataatcccacttaaa 734

                                                                       
Query: 184 tgcaaaatatttacattcaagcaaaattttaaactatttcatgcatgtgaagccagtcac 243
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tgcaaaatatttacattcaaacaaaattttaaactatttcatgcatgtgaagccagtcac 674

                                                                       
Query: 244 aagccaaataggatataaactgctaaaagtaggaccactatattttgtgctattttttat 303
           |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 673 aagccaaataggatataaactgctgaaagtaggaccactatattttgtgcta-tttttat 615

                                                                       
Query: 304 tggccattcaggatggaactgtaagtccgtggtggtacactgtggatagtacttccttac 363
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| 
Sbjct: 614 tggccattcaggatggaactgtaaatctgtggtggtacactgtggatagtacttccttat 555

                                                                       
Query: 364 caaaagtgctcatatataataggaaaaggtatacactctcaagtgaaaatctagaaaatt 423
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 taaaagggctcatatataataggaaaaggtatacactctcaagtgaaaatctagaaaatt 495

                                                                       
Query: 424 tacaaaaaaaaaatcactgaccttggcacaaagagcgacatcaggcatcattccagggac 483
           ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tac-aaaaaaaaatcattgaccttggcacaaagagcgacatcaggcatcattccagggac 436

                                                                       
Query: 484 tttgacgtatgatgctcatttcattaatgtgaaaatcggctctcagaaagatgaatggcc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tttgacgtatgatgctcatttcattaatgtgaaaatcggctctcagaaagatgaatggcc 376

                                 
Query: 544 tttccaaagccaaataccactt 565
           ||||||||||||||||||||||
Sbjct: 375 tttccaaagccaaataccactt 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 963
Length adjustment: 10
Effective length of query: 555
Effective length of database: 953
Effective search space:   528915
Effective search space used:   528915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)